PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05410g01024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22227.2 Da PI: 8.8113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 44 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e+r+p+e +kr++lg++ tae+Aa+a++ a+++l+g Peinf101Scf05410g01024.1 44 PVYRGVRRRN-NDKWVCELREPRE---QKRIWLGSYPTAEMAARAHDVAALALRG 94 68*****887.8*********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 44 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 45 | 104 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-29 | 45 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-26 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.26 | 45 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.37E-28 | 46 | 104 | No hit | No description |
PRINTS | PR00367 | 4.2E-7 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-7 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSNSTTSCFS TKAPLVHEEE ATLLASTKPK KRAGRKKFKE TRHPVYRGVR RRNNDKWVCE 60 LREPREQKRI WLGSYPTAEM AARAHDVAAL ALRGQDATLN FEDSAWLLTV PVSKDPKDLR 120 RAALKAAEAF GPREAAVVTA SRVENNVTNG GVIANNEEMK VVPEDQNTMY NNNCMQNVMA 180 TENVLYDNMD IEGVVLTY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 43 | 101 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777001.1 | 2e-77 | PREDICTED: uncharacterized protein LOC104226669 | ||||
Refseq | XP_016432509.1 | 8e-80 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | Q9SGJ6 | 4e-54 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A1S3WY25 | 2e-78 | A0A1S3WY25_TOBAC; dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A1U7WIB7 | 5e-76 | A0A1U7WIB7_NICSY; uncharacterized protein LOC104226669 | ||||
STRING | XP_009777001.1 | 9e-77 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 4e-37 | ERF family protein |