PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05408g00012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 525aa    MW: 58773.1 Da    PI: 7.8941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05408g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.23.4e-11127935
                      GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                              TplWR+gp  ++ LCnaCG ++r kg+
  Peinf101Scf05408g00012.1  1 TPLWRNGPPEKPILCNACGSRWRTKGT 27
                              9*******66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003206.2E-9127IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-5131No hitNo description
SMARTSM004010.0073141IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-7127IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-10140No hitNo description
PfamPF139192.7E-9271364IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
TPLWRNGPPE KPILCNACGS RWRTKGTLAN YTPLHARAEP DDFEDYRVSR VKNMSLKNKE  60
AKVLKRKLNH GTTEVRTPPD YYQGFLKGFD EDTSNRSSSG SAISNSESYA QFGSTEASDL  120
TGPAQSNIWD ATVPSRKRTC VSRPKQSSVE KLTKDLYTIL HEQQSSYFSG SSEEDLLFES  180
DKPMVSVEIG HGSVLIRHPN SISREEESEA SSLSVDNKRH CINESYSRLT TPHVNINKGV  240
YLPNLGTERT KKPTSQGMEQ NQIKRDKDHL EKLQILGHHK SPLCHIDMKD VLNYEEFMRQ  300
CSSDEQQQLL KYLAPVDSCA PPDSLKSMFE SSHFEENLSH FQKLLAEGVF DNSLSGVKIE  360
DSRSLKKLIL CYLTKSKWVE KYNLLKDAKC KSSASGYEAG VPSGIGTGHS VNVKRPLERH  420
HPKTAGAMNT MKSPKMMMMM KNSYEQKELL DNNNSCFRPK SLFASPCYSS PLLDPLHFAS  480
ESSDQDLLLD VPSNSSFPQA ELLQPTSSIA AKASTSSSCI YPHLV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-148HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263526.10.0PREDICTED: GATA transcription factor 26 isoform X1
SwissprotQ8W4H11e-136GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A314L7K00.0A0A314L7K0_NICAT; Gata transcription factor 26
STRINGXP_009772103.10.0(Nicotiana sylvestris)
STRINGXP_009626897.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-128GATA transcription factor 26