PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05363g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 26307.1 Da PI: 6.4166 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 23 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT eEd ll++++ ++G g+W+ a++ g Rt++++k++w++ Peinf101Scf05363g00005.1 23 RGPWTVEEDTLLIHYISLHGEGRWNILAKRAG--RTDNEIKNYWRT 66 89*****************************8..**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.73E-14 | 18 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.502 | 18 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 19 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 23 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-12 | 25 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTSLSKSSSS STTTSDDDIG LRRGPWTVEE DTLLIHYISL HGEGRWNILA KRAGRTDNEI 60 KNYWRTRVQK QARHLKIDSN SVAFQELIHR FWIPRLRQKI QGSSASQSTP SLSSQIPQGL 120 RLEKNNSSCS STSSHSSESL NISKAPISEC PNLIPPGDHS DLNSFIKAHF PLDDEGYDME 180 TFSPSTCSFK DVLDYDQMSG EHNRTGDVLA DSFWSMDEFY NYGHPSCFMG FMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804370.1 | 1e-66 | PREDICTED: transcription factor MYB57-like | ||||
Refseq | XP_016509791.1 | 1e-66 | PREDICTED: transcription factor MYB57-like isoform X1 | ||||
TrEMBL | A0A2G3A377 | 2e-66 | A0A2G3A377_CAPAN; Transcription factor | ||||
STRING | XP_009804370.1 | 5e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.2 | 6e-27 | myb domain protein 116 |