PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05325g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34839 Da PI: 8.3094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl Peinf101Scf05325g00004.1 14 RGPWSPEEDAKLKDFIHKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.1 | 3.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Peinf101Scf05325g00004.1 69 GDFSDEEDRIICSLYSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.358 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.92E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.15E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.165 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0035987 | Biological Process | endodermal cell differentiation | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000021 | Biological Process | regulation of ion homeostasis | ||||
GO:2000067 | Biological Process | regulation of root morphogenesis | ||||
GO:0048226 | Cellular Component | Casparian strip | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRIIC SLYSTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 IPSSIIQRKS PYMFPPTTLH ATQVQPNNLY TPNLSYTNNN MNFPLGATNH QYSYNFQSHH 180 QDSLINPMQI YPQLKDNLLM FGGTTEASCS SSDGSCSQLS FGHREIKKED IIMGNFSHGQ 240 ISSVAFEENQ NFMSWVDQKP NGYFGNNNNQ SADQVLLQYD LDQEVKQQQL TSCSNGNNGT 300 TTTECNNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF496586 | 1e-109 | JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600706.1 | 1e-132 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016497782.1 | 1e-132 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S4C964 | 1e-130 | A0A1S4C964_TOBAC; transcription factor RAX2-like | ||||
STRING | XP_009600706.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-79 | myb domain protein 36 |