PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05269g00031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 745aa    MW: 82959.3 Da    PI: 6.3027
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05269g00031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.4e-21108163156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               r+k +++t++q++e+e+lF+++++p++++re+L+k+lgL  rqVk+WFqNrR++ k
  Peinf101Scf05269g00031.1 108 RKKYHRHTTQQIREMEALFKESPHPDEKQREQLSKQLGLHPRQVKFWFQNRRTQIK 163
                               7999************************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2293159IPR009057Homeodomain-like
SuperFamilySSF466893.22E-2194166IPR009057Homeodomain-like
PROSITE profilePS5007118.074105165IPR001356Homeobox domain
SMARTSM003899.9E-19107169IPR001356Homeobox domain
PfamPF000461.4E-18108163IPR001356Homeobox domain
CDDcd000863.61E-17112163No hitNo description
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084819.433267429IPR002913START domain
SuperFamilySSF559613.85E-23272482No hitNo description
CDDcd088756.89E-87272481No hitNo description
SMARTSM002344.8E-44276482IPR002913START domain
PfamPF018526.7E-31279434IPR002913START domain
PROSITE profilePS5084810.318431485IPR002913START domain
PfamPF018524.9E-9438482IPR002913START domain
SuperFamilySSF559611.34E-12513733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGVVDMSNNH PPPSQTKDFF PSPSPALSLS LAGIFRDGAA AGNMETEEVD DGSASRGRPR  60
EESTVEISSE NSGPVRSRGS NEDFEHDADT YNEDEELDPN NSNKKKKRKK YHRHTTQQIR  120
EMEALFKESP HPDEKQREQL SKQLGLHPRQ VKFWFQNRRT QIKAIQERHE NSLLKAELEK  180
LRGENKGLRK NPSCPNCGFA GSSNEAPTIP AEEQQLRMEN ARLRAEVEKL RAALGKYPRG  240
TSPNSSSCSG GNDEGNRSAL DFYTGIFGLE SSRVMHAVNQ AMEELRTMAT SGEPLWIRSF  300
ETGREILNYD EYMKEFSKEK SGDGWLNKRM SIEASRETGI VFMELPRLVQ SFMDVNQWKE  360
MFPSMISKAA TVDVICNGEG ANSWDGAVQL MFAELQMPTP VVGTREVYFV RYCKQISVGH  420
WAIVDVSVDK VEDNIDASLV TWVEHLECQK SIVHSLYRLI VNSGQAFGAR RWMATLQQQC  480
ERLLFSMATN IPTKDTTGVA TLAGRKSILT LAQRMTYSFY RMLGASSYNT WNKVPSKTGL  540
EDIRVASRKN LTDHSEPLGI IICAVSSIWL PVSRSVLFEY LKDETRRHEW DVMSNGGPAQ  600
SIANLAKGQD KGNAVSIQAV KLRENSMWIL QDTCTNAYES AVVYAPVDIT GMQSVMTGCD  660
SSNTAVLPSG FSILPDGVES RGLVISSRPD DRSSDGGSLL TVVFQILTSN TPTAKVSKDS  720
VESVANLLSC TLHKIKTSFQ SEDGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KKKKRK
2103109KKKKRKK
3105109KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778213.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1U7WHU10.0A0A1U7WHU1_NICSY; homeobox-leucine zipper protein GLABRA 2
STRINGXP_009778213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]