PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf05042g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 348aa MW: 39063.2 Da PI: 6.8195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf05042g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112	6.8e-35	54	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+Ptd+el+ e+L++kv ++e ++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+ Peinf101Scf05042g00001.1 54 LPAGVKFDPTDQELI-EHLEAKVVLANIESKShplidefipTIEGEdGICYTHPEKLP-GVTRDGLNRHFFHRPSKAYTTGTRKR 136 799**********.9999888555445566665544776646******.555667799*************** PP NAM 76 ra.........tksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128 r+ + +W++tgk+++v++ +g+++g+kk+Lv+yk g+++k+ekt+Wvmh+y+l Peinf101Scf05042g00001.1 137 RKiqtecddlqGGETRWHKTGKTRPVIV-NGKQKGCKKILVLYKnfGKNRKPEKTNWVMHQYHL 199 756555554433778*********.999*******7346999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
SuperFamily	SSF101941	1.19E-38	49	218	IPR003441	NAC domain
PROSITE profile	PS51005	32.848	54	218	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	55	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MIKSISNTHQ LGSISSSCDL IDAKLEEHQL AGGSNLQCPC CGHKLERKPD WVGLPAGVKF 60 DPTDQELIEH LEAKVVLANI ESKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLNRH 120 FFHRPSKAYT TGTRKRRKIQ TECDDLQGGE TRWHKTGKTR PVIVNGKQKG CKKILVLYKN 180 FGKNRKPEKT NWVMHQYHLG HYEEETEGEL VVSKIFYQTQ PRQCSSKEIN IPCHGDELSV 240 AVCGAMSSYS TMDIQQLKAD NFGFLPFEKS SEAGITVADD PISTTALHIS RPSSSISAIM 300 DQPNLHHTSV ILEKDSFHVP GIILPHEHFQ ESSISNPQEV DWLKYSPF

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MIKSISNTHQ LGSISSSCDL IDAKLEEHQL AGGSNLQCPC CGHKLERKPD WVGLPAGVKF  60
DPTDQELIEH LEAKVVLANI ESKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLNRH  120
FFHRPSKAYT TGTRKRRKIQ TECDDLQGGE TRWHKTGKTR PVIVNGKQKG CKKILVLYKN  180
FGKNRKPEKT NWVMHQYHLG HYEEETEGEL VVSKIFYQTQ PRQCSSKEIN IPCHGDELSV  240
AVCGAMSSYS TMDIQQLKAD NFGFLPFEKS SEAGITVADD PISTTALHIS RPSSSISAIM  300
DQPNLHHTSV ILEKDSFHVP GIILPHEHFQ ESSISNPQEV DWLKYSPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338197.1	1e-173	PREDICTED: uncharacterized protein LOC102578141 isoform X2
Swissprot	Q9M0F8	1e-126	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M1BES7	1e-171	M1BES7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400043521	1e-172	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-128	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]