PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05020g00054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 335aa    MW: 38730.9 Da    PI: 4.3217
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05020g00054.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-142731895
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                              +p +f+   +gk   + ++ l+d+ g+ W + l   k  +  ++++GW +F ++n+++ gDf++F +dg+  f   +k
  Peinf101Scf05020g00054.1  2 IPASFTLYKNGK--LPEKVALRDKYGNMWPIGL--AKIERDLYFQEGWDKFTEENNVENGDFFIFDYDGNGVFD--FK 73
                              777886333444..6678***************..*********************************988774..33 PP

2B336.49.4e-12233312990
                               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                               ++ ++++l++p + +++++++   + ++t++d+ gr++e kl+++k + r++lt+GW + ++ n ++ +D ++ ++++   ++
  Peinf101Scf05020g00054.1 233 HAKRRDMLYIPADVLKDYNIE--LPSKMTIRDSAGREFEAKLKIWKDG-RIWLTGGWGRLCRWNLVEKKDRCICEFVRGkGKR 312
                               567899************866..6779***************999996.89**********************9988653444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.298178IPR003340B3 DNA binding domain
SMARTSM010191.2E-4278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-15280IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-12270IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-16280IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-10275No hitNo description
Gene3DG3DSA:2.40.330.103.0E-16221321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-17221309IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.968225324IPR003340B3 DNA binding domain
CDDcd100173.87E-9226311No hitNo description
SMARTSM010190.0015228324IPR003340B3 DNA binding domain
PfamPF023625.3E-10233314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
KIPASFTLYK NGKLPEKVAL RDKYGNMWPI GLAKIERDLY FQEGWDKFTE ENNVENGDFF  60
IFDYDGNGVF DFKLLGRTGC QKIGAGGLKS AVKSEDEEEE EEEMNTHQKS EEPKVMNFDM  120
DSDSIISSSD SDEDYMVEED DEEDEEYEVA EQETEDEATE EEEEEEASEE EEEANEKTVT  180
LKRKAPPSKE TAEEEEENEM QVILESKGPH SKDIFKSGLA TQPKNPYFVA RVHAKRRDML  240
YIPADVLKDY NIELPSKMTI RDSAGREFEA KLKIWKDGRI WLTGGWGRLC RWNLVEKKDR  300
CICEFVRGKG KRGLYLQVQV LHEEQLPTAA RKNNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351837.11e-110PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLM1AQ141e-109M1AQ14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000276731e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.16e-14B3 family protein