PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05020g00054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 38730.9 Da PI: 4.3217 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.3e-14 | 2 | 73 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ +gk + ++ l+d+ g+ W + l k + ++++GW +F ++n+++ gDf++F +dg+ f +k Peinf101Scf05020g00054.1 2 IPASFTLYKNGK--LPEKVALRDKYGNMWPIGL--AKIERDLYFQEGWDKFTEENNVENGDFFIFDYDGNGVFD--FK 73 777886333444..6678***************..*********************************988774..33 PP | |||||||
2 | B3 | 36.4 | 9.4e-12 | 233 | 312 | 9 | 90 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++ ++++l++p + +++++++ + ++t++d+ gr++e kl+++k + r++lt+GW + ++ n ++ +D ++ ++++ ++ Peinf101Scf05020g00054.1 233 HAKRRDMLYIPADVLKDYNIE--LPSKMTIRDSAGREFEAKLKIWKDG-RIWLTGGWGRLCRWNLVEKKDRCICEFVRGkGKR 312 567899************866..6779***************999996.89**********************9988653444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 15.298 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-4 | 2 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-15 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.2E-12 | 2 | 70 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-16 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-10 | 2 | 75 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-16 | 221 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-17 | 221 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.968 | 225 | 324 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.87E-9 | 226 | 311 | No hit | No description |
SMART | SM01019 | 0.0015 | 228 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-10 | 233 | 314 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
KIPASFTLYK NGKLPEKVAL RDKYGNMWPI GLAKIERDLY FQEGWDKFTE ENNVENGDFF 60 IFDYDGNGVF DFKLLGRTGC QKIGAGGLKS AVKSEDEEEE EEEMNTHQKS EEPKVMNFDM 120 DSDSIISSSD SDEDYMVEED DEEDEEYEVA EQETEDEATE EEEEEEASEE EEEANEKTVT 180 LKRKAPPSKE TAEEEEENEM QVILESKGPH SKDIFKSGLA TQPKNPYFVA RVHAKRRDML 240 YIPADVLKDY NIELPSKMTI RDSAGREFEA KLKIWKDGRI WLTGGWGRLC RWNLVEKKDR 300 CICEFVRGKG KRGLYLQVQV LHEEQLPTAA RKNNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351837.1 | 1e-110 | PREDICTED: B3 domain-containing protein At5g60140-like | ||||
TrEMBL | M1AQ14 | 1e-109 | M1AQ14_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027673 | 1e-110 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60140.1 | 6e-14 | B3 family protein |