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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf05020g00053.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | B3 | ||||||||
| Protein Properties | Length: 1492aa MW: 167950 Da PI: 8.997 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 34.9 | 2.8e-11 | 15 | 89 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+p +f++ehg + ++l ++ + W+v l ++++++++l +GW+eF + + ++ f++Fk+ ++s+f +v++f+
Peinf101Scf05020g00053.1 15 MPDRFVREHGDE--LLDAVRLIVPTDEFWSVGL--KRSGKMIWLHDGWQEFMEHHSIDCWYFLLFKYGQNSCF--NVHIFD 89
79*******865..6669***************..********************************999***..999997 PP
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| 2 | B3 | 48.1 | 2.1e-15 | 224 | 297 | 19 | 95 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95
+ +f++e++ ++ s + l+d +g++W++++ +++ + l+kGW++Fv++ L +gD++vF+l+ + ++ e v+k
Peinf101Scf05020g00053.1 224 SAEFVREYM--PKFSNVIELQDCDGNKWTLRC--IRRKYQLCLSKGWSKFVRDTSLVAGDVCVFELITDiQTDEHVLK 297
568999997..447889***************..66667799***********************9977666555544 PP
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| 3 | B3 | 67.3 | 2.2e-21 | 587 | 679 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f ++l+ ++ ++ +l +p +f +e++ k +sk ++l++++g++W+v++i rk l+kGW++Fv++n L++gD++vF+l+
Peinf101Scf05020g00053.1 587 FMQILVEYNAVRNYILNIPAEFSREYMPK--TSKFIKLQNSDGNKWNVRCIRRKD--LSSLSKGWRNFVRDNSLEVGDVCVFELI 667
667777888889999***********855..7789***************54444..456************************9 PP
SS.SEE..EEEE CS
B3 86 gr.sefelvvkv 96
++ ++ el++kv
Peinf101Scf05020g00053.1 668 KDlQTDELMLKV 679
988887777665 PP
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| 4 | B3 | 39.5 | 1e-12 | 695 | 773 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+ l++p +f++ehg + t++l ++ + W+v+l ++++++++l +GW+eF + + ++ f++Fk+ ++s+f +v++f+
Peinf101Scf05020g00053.1 695 DTLRMPDRFVQEHGDE--LLDTVRLIVPTDEFWSVRL--KRSGKMIWLHDGWQEFMEHHSIDCWYFLLFKYGQSSCF--NVHIFD 773
6799*********865..667****************..********************************999***..999987 PP
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| 5 | B3 | 61.3 | 1.7e-19 | 912 | 997 | 8 | 96 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91
++ +++l ++ +f++e++ k +s + l+d +g++W+v++ +++++++l+kGW++Fvk+ L +gD++vF+l+ + +++e
Peinf101Scf05020g00053.1 912 KNPYFTKILNISAEFVREYMPK--TSNVIELQDCDGNKWNVRC--IRRKDQIYLSKGWSNFVKDTSLVAGDVCVFELITDiQTAE 992
5555567799*********844..6779***************..899999**************************98878777 PP
.EEEE CS
B3 92 lvvkv 96
++kv
Peinf101Scf05020g00053.1 993 HMLKV 997
66665 PP
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| 6 | B3 | 67.6 | 1.8e-21 | 1373 | 1465 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f vl + +v ++++l +p +fa+e+ +++s + l+d +g++W+v++ +++++++l+kGW +Fv++n L+++D++vF+
Peinf101Scf05020g00053.1 1373 FTAVLAKYNVVRHHILNIPTEFAREYI--PKTSNVIELQDCDGNKWNVRC--IRRKDQIYLGKGWLNFVRDNSLEVRDVCVFE 1451
56677788999***************5..336679***************..899999************************* PP
E-SS.SEE..EEEE CS
B3 84 ldgr.sefelvvkv 96
++++ + el++kv
Peinf101Scf05020g00053.1 1452 FIKElQADELMLKV 1465
99877777666554 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 10.024 | 1 | 91 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.7E-4 | 6 | 91 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.47E-11 | 9 | 89 | No hit | No description |
| SuperFamily | SSF101936 | 4.12E-13 | 14 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-13 | 14 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 8.1E-8 | 14 | 89 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 206 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 7.06E-22 | 208 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.59E-18 | 211 | 301 | No hit | No description |
| SMART | SM01019 | 1.5E-15 | 213 | 304 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.449 | 223 | 304 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.3E-13 | 225 | 297 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 7.6E-27 | 581 | 684 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.71E-27 | 582 | 684 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.25E-27 | 585 | 683 | No hit | No description |
| PROSITE profile | PS50863 | 16.779 | 587 | 685 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.0E-20 | 587 | 685 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.7E-19 | 587 | 679 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.69E-15 | 679 | 781 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.73E-12 | 680 | 773 | No hit | No description |
| SMART | SM01019 | 6.9E-4 | 689 | 775 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 692 | 774 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.292 | 695 | 775 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.7E-9 | 695 | 773 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 14.24 | 905 | 1003 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.36E-20 | 907 | 1000 | No hit | No description |
| SuperFamily | SSF101936 | 7.85E-23 | 911 | 1001 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.6E-23 | 913 | 1001 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 1.0E-16 | 915 | 997 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 6.7E-15 | 916 | 1003 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.4E-27 | 1367 | 1470 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 9.03E-27 | 1368 | 1470 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.06E-27 | 1371 | 1469 | No hit | No description |
| PROSITE profile | PS50863 | 15.636 | 1373 | 1471 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.8E-17 | 1373 | 1471 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.1E-19 | 1373 | 1469 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009909 | Biological Process | regulation of flower development | ||||
| GO:0010048 | Biological Process | vernalization response | ||||
| GO:0005654 | Cellular Component | nucleoplasm | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1492 aa Download sequence Send to blast |
MDTSVYFVVV AGGRMPDRFV REHGDELLDA VRLIVPTDEF WSVGLKRSGK MIWLHDGWQE 60 FMEHHSIDCW YFLLFKYGQN SCFNVHIFDL TAAEIHYRLR SHGNTKLQDI SQDLSLGKEK 120 VVGDNDSGSS VEIVDPLKTE QGPESSAKSS ELSHGAKRCK LAPGKNTSKS FTGQQLEKSV 180 RCGRPHNRGR PGAAEANRAI NAAKMFIPKN PYFLKILAGY NNVSAEFVRE YMPKFSNVIE 240 LQDCDGNKWT LRCIRRKYQL CLSKGWSKFV RDTSLVAGDV CVFELITDIQ TDEHVLKVHI 300 FHSRVAENST NLHTCSKTEP TLSVSKNCIL QFDESKDTES SDAFGSLSSN RTNCKTDTGK 360 SFTGQQMKKS IHYRLRSHGN ARLHHISQDL SHGKKIGFDN DGESSVEIVD LLETAQGPES 420 SAKTSELSHG PKKRKIAPGR SKFWHCYETR SKANILHDKG QLLNAKSLNI VRDSSLSKPL 480 MGKLVQQNMN TSTYSAVVAG GVTNQDNARE GSKTDILQFN ECKQTESSDA FGPVSSNRTY 540 CNDTGKSFPS QQLEKSVMPH KRGQPSVADA NRAKNAAEMF IPKNPYFMQI LVEYNAVRNY 600 ILNIPAEFSR EYMPKTSKFI KLQNSDGNKW NVRCIRRKDL SSLSKGWRNF VRDNSLEVGD 660 VCVFELIKDL QTDELMLKVH IFRARVEENS TTPVDTLRMP DRFVQEHGDE LLDTVRLIVP 720 TDEFWSVRLK RSGKMIWLHD GWQEFMEHHS IDCWYFLLFK YGQSSCFNVH IFDLTAAEIH 780 YRLRNHGNAK LQDISQDLSL GKEKVVGDND GGSSVEIVDP LKTEEGPESS AKSSELSHGA 840 KRCKLAPGKS KFWRCDETRS KENELPVSSN TSKSFTQQLE KSVRSGRPQN RGRPWTAEVN 900 RAINAAKMFI PKNPYFTKIL NISAEFVREY MPKTSNVIEL QDCDGNKWNV RCIRRKDQIY 960 LSKGWSNFVK DTSLVAGDVC VFELITDIQT AEHMLKVHIF HSRVEESSTN LHTCSVTEPT 1020 LPVSKTCILQ FSESKDTESS DASGPLSSNK TNCKTDMDKS STSQQLEESV RRGRPPKRGR 1080 PLAAEANRSI NSAKIFMPKD PYFMQIHYRL RSHGNARLHH ISQDLSHGKK IGGDNDGESS 1140 VEIVNPLETE QGPESSAKSS EPFHGAKKRK IAPGRHKFLR CYETRSKANR LHDKGQVLNA 1200 KNLNMMGDIS LTKPLLGKLV QQNMDTSTYS AVVAGGVPNQ DNAREGSKNE VYSAVVAGGV 1260 LNQDNAREGS KNEVCSAVVA GGVPNQDNAR EGSKNDAYSA VVAGGVPNQD NAREGSKNDT 1320 LQRNENTSKS FAGQQLEKSV RCGRPHKRER SWAAEANRAI NAAKLFMPKN PSFTAVLAKY 1380 NVVRHHILNI PTEFAREYIP KTSNVIELQD CDGNKWNVRC IRRKDQIYLG KGWLNFVRDN 1440 SLEVRDVCVF EFIKELQADE LMLKVHIFRA RVEQNATTSL DTLVAYLNQL SI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4i1k_A | 3e-19 | 566 | 1469 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 3e-19 | 566 | 1469 | 23 | 144 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006357562.1 | 1e-165 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
| TrEMBL | A0A1S4CJK2 | 1e-155 | A0A1S4CJK2_TOBAC; B3 domain-containing transcription factor VRN1-like | ||||
| TrEMBL | A0A2G3BVQ6 | 1e-155 | A0A2G3BVQ6_CAPCH; Uncharacterized protein | ||||
| STRING | XP_009613233.1 | 1e-156 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA8557 | 15 | 29 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 1e-38 | B3 family protein | ||||
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