PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05020g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 187aa    MW: 21584.9 Da    PI: 9.9015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05020g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-1821105898
                               -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                        B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               s v++   l++p +f++++   +e++ + tl+ + g +W+vkl      ++ v+++GW++F k+n+Lk g+f+vF++dg+++f++
  Peinf101Scf05020g00003.1  21 STVTS--ELRIPAHFLRHIP--EESPDKATLKCLCGGTWNVKL--HSDVDGLVMQQGWEKFQKDNQLKYGEFLVFRYDGNMQFTY 99 
                               44444..49*******8885..457779***************..999999********************************99 PP

                               EEEEE- CS
                        B3  93 vvkvfr 98 
                               v k fr
  Peinf101Scf05020g00003.1 100 VPKSFR 105
                               988777 PP

2B3634.8e-20991761798
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               ++pk+f e+   +   ++t+ l++++g+ W+v++    ++g + +++GWk+Fv +n+LkegD++vF+l++ ++ el+v+vf+
  Peinf101Scf05020g00003.1  99 YVPKSFREKLPRS--AKITVALYNSEGKDWKVNC--VAQRGYHAFSGGWKQFVTDNKLKEGDVCVFQLVNVDTNELKVSVFN 176
                               5799998877544..5689***************..999999**************************9999999****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-191198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-201198IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.5561282IPR003340B3 DNA binding domain
CDDcd100172.03E-141398No hitNo description
SMARTSM010194.8E-71597IPR003340B3 DNA binding domain
PROSITE profilePS5086315.07283178IPR003340B3 DNA binding domain
SMARTSM010192.7E-698178IPR003340B3 DNA binding domain
CDDcd100172.45E-1699176No hitNo description
PfamPF023628.4E-1899176IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-1899175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1999176IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKKRNSLKID KRPIFYKIYN STVTSELRIP AHFLRHIPEE SPDKATLKCL CGGTWNVKLH  60
SDVDGLVMQQ GWEKFQKDNQ LKYGEFLVFR YDGNMQFTYV PKSFREKLPR SAKITVALYN  120
SEGKDWKVNC VAQRGYHAFS GGWKQFVTDN KLKEGDVCVF QLVNVDTNEL KVSVFNDPPK  180
SLLKLAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089728.13e-45B3 domain-containing transcription factor VRN1-like
RefseqXP_019262063.17e-45PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A3Q7EST51e-43A0A3Q7EST5_SOLLC; Uncharacterized protein
STRINGSolyc01g108930.2.13e-44(Solanum lycopersicum)
STRINGXP_009769346.16e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-15B3 family protein