PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05020g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 21584.9 Da PI: 9.9015 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.9e-18 | 21 | 105 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 s v++ l++p +f++++ +e++ + tl+ + g +W+vkl ++ v+++GW++F k+n+Lk g+f+vF++dg+++f++ Peinf101Scf05020g00003.1 21 STVTS--ELRIPAHFLRHIP--EESPDKATLKCLCGGTWNVKL--HSDVDGLVMQQGWEKFQKDNQLKYGEFLVFRYDGNMQFTY 99 44444..49*******8885..457779***************..999999********************************99 PP EEEEE- CS B3 93 vvkvfr 98 v k fr Peinf101Scf05020g00003.1 100 VPKSFR 105 988777 PP | |||||||
2 | B3 | 63 | 4.8e-20 | 99 | 176 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++pk+f e+ + ++t+ l++++g+ W+v++ ++g + +++GWk+Fv +n+LkegD++vF+l++ ++ el+v+vf+ Peinf101Scf05020g00003.1 99 YVPKSFREKLPRS--AKITVALYNSEGKDWKVNC--VAQRGYHAFSGGWKQFVTDNKLKEGDVCVFQLVNVDTNELKVSVFN 176 5799998877544..5689***************..999999**************************9999999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-19 | 11 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 11 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.556 | 12 | 82 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.03E-14 | 13 | 98 | No hit | No description |
SMART | SM01019 | 4.8E-7 | 15 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.072 | 83 | 178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-6 | 98 | 178 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.45E-16 | 99 | 176 | No hit | No description |
Pfam | PF02362 | 8.4E-18 | 99 | 176 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.66E-18 | 99 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 99 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKKRNSLKID KRPIFYKIYN STVTSELRIP AHFLRHIPEE SPDKATLKCL CGGTWNVKLH 60 SDVDGLVMQQ GWEKFQKDNQ LKYGEFLVFR YDGNMQFTYV PKSFREKLPR SAKITVALYN 120 SEGKDWKVNC VAQRGYHAFS GGWKQFVTDN KLKEGDVCVF QLVNVDTNEL KVSVFNDPPK 180 SLLKLAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089728.1 | 3e-45 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_019262063.1 | 7e-45 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A3Q7EST5 | 1e-43 | A0A3Q7EST5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g108930.2.1 | 3e-44 | (Solanum lycopersicum) | ||||
STRING | XP_009769346.1 | 6e-44 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 2e-15 | B3 family protein |