PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05015g00021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family CPP
Protein Properties Length: 604aa    MW: 65684.2 Da    PI: 7.9035
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05015g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.5e-14124163242
                       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                               ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  Peinf101Scf05015g00021.1 124 KQKQCNCKHSRCLKLYCECFASGMYCDG-CNCNNCHNNVEN 163
                               89**************************.********9875 PP
2TCR49.77.2e-16208247140
                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                               k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC++CkN e
  Peinf101Scf05015g00021.1 208 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCKECKNFE 247
                               589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.4E-16123163IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.648124248IPR005172CRC domain
PfamPF036383.9E-11125160IPR005172CRC domain
SMARTSM011144.8E-18208249IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-12211246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEKSEGGDSF PPKKVQSEAA VAPTVDFPAK KLARQLDFTV FSGSGGQSPA TLPEHSQQPV  60
PVKLTQLPRP QLQPQPQQHM VLLPIKQAVV GPTHPSIRPL SKPESPMARP RQNASEVKDG  120
TPKKQKQCNC KHSRCLKLYC ECFASGMYCD GCNCNNCHNN VENEPARREA VDATLERNPN  180
AFRPKIANSP HGARDNTEET GEGLLLAKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC  240
KECKNFEGSE ERQALFHGDH ANNMAHLQQA ANAAITGAIG SSGYGSPPVI KKRKGQELFF  300
GSTMNEPVHR HGQFQQGNHI KASALPSLSS IPGQCVGNAA TVGPSKFTYR SLLADLIQPQ  360
DLKELCSVLV VYSGEAAKML ADEKDASLKQ AEGPREASLA STQERVQNQK DCGTEKDMAG  420
CCSSGDRGEK IGVEESSLDV ADVSKRRPMS PGTLALMCDE SDTMFTTGVT SPNDLATLSC  480
NTSSQLPHGQ GMTETYAEQE RIVLTKFRDC LNRLITLGEI KETKCSSMVR GADSASQNDM  540
ISNVFTMTET RNQHEYFSNG VTRSPHPPQP RTVQLLSAVV STANNKPLPK VHHQDENGDV  600
KPKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-301162572132Protein lin-54 homolog
5fd3_B1e-301162572132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608929.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-180TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S4DP780.0A0A1S4DP78_TOBAC; protein tesmin/TSO1-like CXC 6 isoform X1
STRINGXP_009608929.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-163Tesmin/TSO1-like CXC domain-containing protein