PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04749g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 222aa MW: 25567.5 Da PI: 9.7433

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04749g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.3e-20	11	72	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql Lee+++k r+p+a++++ ++++l +++ ++V++WFqN++a++++ Peinf101Scf04749g00003.1 11 RPTRWSPTPEQLMLLEEMYRKgLRNPNATQIQNITAHLscygKIEGKNVFYWFQNHKARDRQ 72 569***************99***********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.851	8	73	IPR001356	Homeobox domain
SMART	SM00389	2.0E-6	10	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-11	11	73	IPR009057	Homeodomain-like
Pfam	PF00046	8.3E-18	11	72	IPR001356	Homeobox domain
CDD	cd00086	4.36E-5	11	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-7	14	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSHLKREKMT RPTRWSPTPE QLMLLEEMYR KGLRNPNATQ IQNITAHLSC YGKIEGKNVF 60 YWFQNHKARD RQKLKKKLLA QMNQQQILAQ HHPVDAHSTT NNSLFQLPEY SHNSSSVVNQ 120 ICPFTSTTGF LQEGGIKEAS PRVMTYLYPM DLSRPSEMEN CMVRPYGKDW ILMMNITPPL 180 PCNVNDRPLK TLPLFPITTT STLKDQSIIT STMENNVVLS LS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ628172	0.0	FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019239462.1	1e-112	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	C9WKA6	1e-163	C9WKA6_PETHY; WOX3 protein
STRING	XP_009618151.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	9e-40	WOX family protein