PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04358g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 419aa    MW: 46704.4 Da    PI: 8.5438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04358g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-055274123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y C++C++ F r  nL+ H r+H
  Peinf101Scf04358g00011.1 52 YICEICNQGFQRDQNLQMHRRRH 74
                              89********************9 PP
2zf-C2H216.23.1e-05129151123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k +  +s++k H++t+
  Peinf101Scf04358g00011.1 129 WVCEKCSKGYAVQSDYKAHLKTC 151
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-55174No hitNo description
SMARTSM003550.00655274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8665274IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PROSITE patternPS01359054134IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035519093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4120150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-5124149No hitNo description
SMARTSM0035560129156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLENSSSSPV GPSSSSEAFN SNKRKRRPAG TPDPDAEVVT LSPKTLLESD RYICEICNQG  60
FQRDQNLQMH RRRHKVPWKL VKRETLQVKK RVFVCPEPTC LHHDPCHALG DLVGIKKHFR  120
RKHSNNKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDSCTVR  180
TTRPDLQPLQ AGCSSRTASS TSPSSDTNFS SIAPLPRLTM PLPNSHELMN ESPQQHNLEL  240
RLLPSSMACP SRTCDENQLQ APHLNLSIGS SNRGEAGVEP MLSTHFAAQG DSARERASTR  300
DHSIVVSPSR PKDVGNNNKE LNLAMAEKAY AEEARRQAKR QIEFAELEFA SAKRIRQQAQ  360
AELERAQDLK EQATKRISSS ILEITCHACK KKFEAATPDE SSPAMSYMSS ATTEAEGDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-18127181559Zinc finger protein JACKDAW
5b3h_F3e-18127181559Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610524.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-153IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1S3XDD10.0A0A1S3XDD1_TOBAC; protein SHOOT GRAVITROPISM 5-like
STRINGXP_009610524.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-133indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]