PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04356g00022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 820aa    MW: 91692.9 Da    PI: 6.6325
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04356g00022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.2e-24118219199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD 
  Peinf101Scf04356g00022.1 118 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 201
                               99*****************************7333.34459******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               ++F   + +++el+v+v+r+
  Peinf101Scf04356g00022.1 202 FIFL--RGENGELRVGVRRA 219
                               ****..449999*****996 PP
2Auxin_resp121.18.6e-40244326183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vgv+d+dp rWp+SkWr Lk
  Peinf101Scf04356g00022.1 244 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESVKNNHSIGMRFKMRFEGEEAPEQRYTGTIVGVEDADPKRWPKSKWRYLK 326
                               89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-40114247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41115233IPR015300DNA-binding pseudobarrel domain
CDDcd100177.21E-22116218No hitNo description
PfamPF023621.1E-21118219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012118220IPR003340B3 DNA binding domain
SMARTSM010192.0E-23118220IPR003340B3 DNA binding domain
PfamPF065077.3E-37244326IPR010525Auxin response factor
PfamPF023096.8E-11691781IPR033389AUX/IAA domain
SuperFamilySSF542773.19E-12692771No hitNo description
PROSITE profilePS5174524.792694778IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MATSDIDAEK ALYTELWRAC AGPLVTVPQE GELVFYFPQG HIEQVEASTN QASDQQMPVY  60
NLPAKILCRV MNVLLKAEPD TDEVYAQVTL MPEPNQDENA VPKEPTPPPP PRFHVHSFCK  120
TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGNEWRF RHIFRGQPRR  180
HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV  240
LATAWHAIQT KTMFTVYYKP RTSPAEFIVP YDQYMESVKN NHSIGMRFKM RFEGEEAPEQ  300
RYTGTIVGVE DADPKRWPKS KWRYLKVRWD ETSAIPRPDR VSPWKIEPAL SHPALNPLPI  360
PRPKRPRSNV LPSSPDSSVL TREGSSKITA GPSQASGFSR VLQGQEVSTL RGSFVENNES  420
DSSQKPIVWP PSLDDEKSDV HSASKRYQSD NWLPLGRHES SFKDLLSGFG VQGNSSHGLH  480
LASDDQTAFP ASLVTRQALD NEKDFSLLGK KWSLASSGLS LNLMDSGLKG ADTPYQMRGT  540
ARCNGFNEYQ TLPGHRIDHQ QGNWLRPQFV LPYYQMSTHS GEMMPKPMAS LRHEAMKPKE  600
GNCKLFGIPL GSNSAVVDPV MLQKVSSIDS ASNMHFGVHP HQFPTTESDQ KSEQLKGSKI  660
LDDGLTVNDQ EKQFQTSHLG TTDREGKGHI NSTRSCTKVH KQGTALGRSV DLAKFNNYEE  720
LIAELDHLFD FDGELKSRNK NWLVVYTDDE GDMMLVGDDP WQEFCGMVRK IFIYTKEEVQ  780
QMNPGTLNSN GEDNSSIGEG SDAKELKNVQ LPSESSPEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1741135218358Auxin response factor 1
4ldw_A1e-1741135218358Auxin response factor 1
4ldw_B1e-1741135218358Auxin response factor 1
4ldx_A1e-1741135218358Auxin response factor 1
4ldx_B1e-1741135218358Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1439400.0HM143940.1 Solanum lycopersicum auxin response factor 11-like (ARF11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466716.10.0PREDICTED: auxin response factor 2-like isoform X1
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A1S3ZQQ90.0A0A1S3ZQQ9_TOBAC; Auxin response factor
STRINGXP_009592683.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]