PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04208g01029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25973.3 Da PI: 6.6312 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.6e-16 | 102 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Peinf101Scf04208g01029.1 102 VFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 150 589996..678*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.6E-27 | 102 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.941 | 102 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-25 | 102 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-15 | 103 | 158 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-17 | 103 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-9 | 104 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MADPVHDLTK SSQPPQPSDQ SSITPFNCPI PPPLPPPLLQ THIQTTTVAH PTHHEGEISP 60 RPLSNISSPR TVQLPNIPIA TTMSSTSSGG SPSRPTGGKH HVFRGIRSRS GKWVSEIREP 120 RKTTRIWLGT YPTPEMAAAA YDVAALALKG NDAVINFPGN LSSYPSLPPS PSAADIRKAA 180 ATAAALMKPE TGETTVGTQL EALFDMPNLL VDMAEAMMVS PPRMNSQPSD DSPGNSDAES 240 LWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 93 | 158 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508571.1 | 4e-75 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 2e-45 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1S4D5B3 | 9e-74 | A0A1S4D5B3_TOBAC; ethylene-responsive transcription factor ERF027-like | ||||
STRING | PGSC0003DMT400058587 | 6e-74 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-36 | ERF family protein |
Publications ? help Back to Top | |||
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