PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04017g01047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 46414.6 Da PI: 4.7062 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29 | 2.2e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v Peinf101Scf04017g01047.1 16 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.8e-23 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Peinf101Scf04017g01047.1 350 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 393 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.8E-12 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.964 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.63E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.043 | 350 | 392 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.7E-18 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MTSESKTANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSVHSAN QLASRHERVR 60 LETSSNKSTE TKSDQNCQPA WHQGFTRKAR TPRNGKNKIL IGQRKKDEEN MVPEIGSDNS 120 QDIENEFENE EQLLYRVPIF DPFAAELCIV PNEVLDETTT INDLDILLND DDDLGIPEFL 180 STDMELAEFA ADVESLLGEE FTVVEQEEQS QLSNAAVEDN KAIKIEVEDE EMRAVVACHL 240 DPELDMAREA LSWDFEYEET VEQKVMADTT EFLPSDSTDN KVDAKRRLLL RLNHEAVISA 300 WPNLSSPWTD GVRPHFNPDD CWPDFLETWP GEGGSHQTYG GHVRGGDEGR EARVSRYREK 360 RRTRLFSKKI RYEVRKLNAE KRPRLKGRFV KRTSFSAPGF PYLMNKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 360 | 376 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603861.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A3Q9WHF4 | 0.0 | A0A3Q9WHF4_PETHY; Zinc finger protein CONSTANS-like 16 | ||||
STRING | XP_009603861.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 2e-85 | B-box type zinc finger protein with CCT domain |