PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04017g01006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 310aa MW: 34848.1 Da PI: 6.1429

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04017g01006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.6	1.3e-49	5	123	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+ +yL++kv++ ++++ +++++vd++k+ePwdLp+k++ ++kewyfF rd+ky+tg r+nrat++gyWk+ Peinf101Scf04017g01006.1 5 LPPGFRFHPTDEELIIYYLTNKVSDVSFSA-RAFADVDLNKCEPWDLPAKASMGKKEWYFFNLRDRKYPTGLRTNRATEAGYWKT 88 79************************99.88***********9999999************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121 tgkdke+++ +g lvg+kktLvfy+grapkg+kt+W Peinf101Scf04017g01006.1 89 TGKDKEIFH-GGVLVGMKKTLVFYRGRAPKGQKTNW 123 *****.************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-54	3	134	IPR003441	NAC domain
PROSITE profile	PS51005	44.965	5	162	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	6	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEETLPPGFR FHPTDEELII YYLTNKVSDV SFSARAFADV DLNKCEPWDL PAKASMGKKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFHGGV LVGMKKTLVF YRGRAPKGQK 120 TNWEEWVVCR VFQKSSTVKK QQPTSSSPQY SLESPNCDTN YTIANEIGDI HELLNFNGIA 180 TPSNGINNNI SLQNYVNENM NMNLNLAAAT NIVPLLPNLS SSLLSSNLSS VNSLLLRALQ 240 SRVYNQPREA ATVSDYYSLI TPSLQGISHF GNDFTNSNFA EGVASSSMVL DSVQQQQVQE 300 EPCKLDIDIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	4	140	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	4	140	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	4	140	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	4	140	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	4	140	19	174	NAC domain-containing protein 19
3swm_B	1e-49	4	140	19	174	NAC domain-containing protein 19
3swm_C	1e-49	4	140	19	174	NAC domain-containing protein 19
3swm_D	1e-49	4	140	19	174	NAC domain-containing protein 19
3swp_A	1e-49	4	140	19	174	NAC domain-containing protein 19
3swp_B	1e-49	4	140	19	174	NAC domain-containing protein 19
3swp_C	1e-49	4	140	19	174	NAC domain-containing protein 19
3swp_D	1e-49	4	140	19	174	NAC domain-containing protein 19
4dul_A	1e-49	4	140	16	171	NAC domain-containing protein 19
4dul_B	1e-49	4	140	16	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510212	0.0	AF510212.1 Petunia x hybrida nam-like protein 15 (NH15) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763274.1	1e-135	PREDICTED: NAC domain-containing protein 77-like isoform X1
Refseq	XP_016442160.1	1e-135	PREDICTED: NAC domain-containing protein 79-like isoform X1
TrEMBL	Q8LKN9	1e-173	Q8LKN9_PETHY; Nam-like protein 15 (Fragment)
STRING	XP_009763274.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	5e-90	NAC domain containing protein 58