PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03806g00041.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 884aa MW: 97864.2 Da PI: 6.4219

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03806g00041.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.3	7.8e-15	327	458	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..................................---..--SEEEEEETTS-EEEEEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................................ggkkeesktltledesgrsWevkli 51 f+kvl+ sd+++ grlvlpk +ae +++ e+ ++++d +g++W+++++ Peinf101Scf03806g00041.1 327 FEKVLSASDAGRIGRLVLPKACAEFEnmiscllplwshmvsllctfsassmpnpmqayfpPINQSEGLPIRIQDIKGKEWTFQFR 411 99******************976589*************999999999999998555557778***********9 PP ...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 52 y..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++s++yvl+ G + +L++gD+v+F++++ +++lv+++++ Peinf101Scf03806g00041.1 412 FwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID-PGGKLVMGFRK 458 9899999999.*******************887.78878888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.59E-15	324	461	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.9E-24	324	462	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.62E-18	325	458	No hit	No description
SMART	SM01019	1.7E-13	327	459	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-12	327	458	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.713	396	460	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.202	584	634	IPR011124	Zinc finger, CW-type
Pfam	PF07496	2.4E-12	589	631	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MGSMICMNEL CRATTSSEWK KGWGLKSGGF AKLCYNCGSA FENLVFCETF HLEESGWREC 60 RTCRKRVHCG CIASKYLYEY LDYGGVGCIS CMSHLDGHSI RPIQFFYEIP GDDLPNGTLG 120 TKSAPPLGVE NKMDENNFDK RRGMRLSKPV ETSEPGQLFQ TPKNDIKQET MLPIGNVSTC 180 FSNLSPQPIG ASLFGKPDND IPSQGVKDMF DSINQPSLNF SLSTPIGTSN SGQPFLGGDV 240 EGREQSKNSP FQQGQRTRHI LPKPPKPSPN SGSESNKGMA SQQRIARPPA EGRGGRNQLL 300 PRYWPRITDQ ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE FENMISCLLP 360 LWSHMVSLLC TFSASSMPNP MQAYFPPINQ SEGLPIRIQD IKGKEWTFQF RFWPNNNSRM 420 YVLEGVTPCI QNMQLQAGDT VIFSRIDPGG KLVMGFRKAT NNVDIPDTQT SNLPNGSGSA 480 ETTFTGITEN LTNGARTSDD SVNRQVPISD KKKARNIGSK NKRLHMHADD AMELRITWEE 540 AQELLRPPPT NNAPTIVKIE DCEFEEYNEP PVFGKRTIFT ARSSGDQEQW AQCDSCTKWR 600 RLPVHVLLPA KWTCSDNVWD SKRSSCAAPD EINPRELEAF FRVDKDLKRQ KLVENNEDCE 660 PSGLDALAAL AVLGDNIGDL GEPSVGATTK HPRHRPGCSC IVCIQPPSGK GKHPPTCKCN 720 VCLTVKRRFK TLMLRKKKKQ SEREAELAQA KDQIPPKDES EIDGASGTDL LHMNHAENEN 780 MNHSENERNS NGDQTEEFGA GKGQLDLNCH PNRDDDMLVE ATAGMSMTSL VNAANLPLEY 840 LTQNGLESLA NSLLSQTAGE SEVHHPDNGF RKTADAEKDN KGDE

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MGSMICMNEL CRATTSSEWK KGWGLKSGGF AKLCYNCGSA FENLVFCETF HLEESGWREC  60
RTCRKRVHCG CIASKYLYEY LDYGGVGCIS CMSHLDGHSI RPIQFFYEIP GDDLPNGTLG  120
TKSAPPLGVE NKMDENNFDK RRGMRLSKPV ETSEPGQLFQ TPKNDIKQET MLPIGNVSTC  180
FSNLSPQPIG ASLFGKPDND IPSQGVKDMF DSINQPSLNF SLSTPIGTSN SGQPFLGGDV  240
EGREQSKNSP FQQGQRTRHI LPKPPKPSPN SGSESNKGMA SQQRIARPPA EGRGGRNQLL  300
PRYWPRITDQ ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE FENMISCLLP  360
LWSHMVSLLC TFSASSMPNP MQAYFPPINQ SEGLPIRIQD IKGKEWTFQF RFWPNNNSRM  420
YVLEGVTPCI QNMQLQAGDT VIFSRIDPGG KLVMGFRKAT NNVDIPDTQT SNLPNGSGSA  480
ETTFTGITEN LTNGARTSDD SVNRQVPISD KKKARNIGSK NKRLHMHADD AMELRITWEE  540
AQELLRPPPT NNAPTIVKIE DCEFEEYNEP PVFGKRTIFT ARSSGDQEQW AQCDSCTKWR  600
RLPVHVLLPA KWTCSDNVWD SKRSSCAAPD EINPRELEAF FRVDKDLKRQ KLVENNEDCE  660
PSGLDALAAL AVLGDNIGDL GEPSVGATTK HPRHRPGCSC IVCIQPPSGK GKHPPTCKCN  720
VCLTVKRRFK TLMLRKKKKQ SEREAELAQA KDQIPPKDES EIDGASGTDL LHMNHAENEN  780
MNHSENERNS NGDQTEEFGA GKGQLDLNCH PNRDDDMLVE ATAGMSMTSL VNAANLPLEY  840
LTQNGLESLA NSLLSQTAGE SEVHHPDNGF RKTADAEKDN KGDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-62	305	465	2	130	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	725	736	KRRFKTLMLRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226726	0.0	AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772834.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1-like
TrEMBL	A0A1U7WDV9	0.0	A0A1U7WDV9_NICSY; B3 domain-containing transcription repressor VAL1-like
STRING	XP_009772834.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1