PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03731g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 20330.3 Da PI: 4.654 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 15 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W+++Ed +l++++ ++G g+W++++ Peinf101Scf03731g00039.1 15 KGLWSPDEDHKLKNYILEHGHGCWSSVPINAE 46 678***********************997766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.04E-6 | 8 | 43 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.063 | 10 | 41 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.5E-6 | 15 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00145 | 18 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MRCKPVESPK KKHRKGLWSP DEDHKLKNYI LEHGHGCWSS VPINAEGSLT DTDQSISQTE 60 FLKEPRESNF QKVLFAEWFS LDQFKSQDFQ NSGNSNHSKN NNFGYNKSDF QDGFIHGLFM 120 SESTYGADIN IPGVLNNETV DDMFQASQFK FENQMSANGF EEFISDEFNI TGDVMYI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770980.1 | 7e-44 | PREDICTED: transcription factor MYB46-like | ||||
Refseq | XP_016471228.1 | 7e-44 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A1S4A3L1 | 2e-42 | A0A1S4A3L1_TOBAC; transcription repressor MYB6-like | ||||
TrEMBL | A0A1U7W9R4 | 2e-42 | A0A1U7W9R4_NICSY; transcription factor MYB46-like | ||||
STRING | XP_009770980.1 | 3e-43 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 5e-14 | myb domain protein 19 |