PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03731g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10736.1 Da PI: 9.9491 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.4e-11 | 3 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++++a + + ++ +W+ Iar++g g+++++++ ++ Peinf101Scf03731g00001.1 3 SWTARQNKKFKEALAIYDNDtpdRWHNIARCVG-GKSAEEVRRHYE 47 6********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.7E-7 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.1 | 1 | 54 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-5 | 3 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.72E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-8 | 3 | 50 | No hit | No description |
Pfam | PF00249 | 3.9E-8 | 3 | 47 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MASWTARQNK KFKEALAIYD NDTPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ 60 IPLPNYRSTE RNSTGYANQQ KYHKSLFPAK PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-28 | 4 | 72 | 11 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244969.1 | 6e-48 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2G3AX88 | 1e-49 | A0A2G3AX88_CAPCH; Protein RADIALIS-like 6 | ||||
STRING | XP_009771192.1 | 7e-47 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 9e-35 | RAD-like 6 |