PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03539g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20696.3 Da PI: 7.149 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.2e-20 | 76 | 152 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 +p +fa+e+ +++s + l+d +g++W+v + +++++++l+kGW +Fv++n L+++D++vF+l+++ + el++kv Peinf101Scf03539g00026.1 76 NIPTEFAREYI--PKTSNVIELQDCDGNKWNVCC--IRRKDQIYLGKGWLNFVRDNSLEVRDVCVFELIKElQADELMLKV 152 69********5..336679***************..899999*************************99887777766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.62 | 60 | 158 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.42E-24 | 64 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-12 | 67 | 158 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-24 | 73 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.4E-18 | 77 | 156 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.41E-24 | 77 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
PNQDNAREGS KNDTLQRNES KQTSSDVFGP VSSNRTNCND TSKSFAGQQL EKSVSHVYNL 60 TFFLCTCFKT CPNLQNIPTE FAREYIPKTS NVIELQDCDG NKWNVCCIRR KDQIYLGKGW 120 LNFVRDNSLE VRDVCVFELI KELQADELML KVHIFRARVE QNATTSLDTL VAYLNQLSIS 180 K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613233.1 | 3e-46 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A1S4CJK2 | 2e-44 | A0A1S4CJK2_TOBAC; B3 domain-containing transcription factor VRN1-like | ||||
STRING | XP_009613233.1 | 1e-45 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8557 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-10 | B3 family protein |