PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03535g00015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 465aa    MW: 53067.6 Da    PI: 6.604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03535g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16122168148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Peinf101Scf03535g00015.1 122 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARGGKQCRERWHNHL 168
                               799*****************************.*************97 PP
2Myb_DNA-binding59.67.1e-19174216145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               +++W++eE++ lv+a+kqlG++ W+ Ia++++ gRt++ +k++w+
  Peinf101Scf03535g00015.1 174 KDSWSEEEELMLVEAHKQLGNR-WAEIAKRIP-GRTENAIKNHWN 216
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.038117172IPR017930Myb domain
SuperFamilySSF466898.63E-30119215IPR009057Homeodomain-like
SMARTSM007171.1E-15121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-26123174IPR009057Homeodomain-like
CDDcd001679.15E-15125168No hitNo description
PfamPF139213.7E-19125184No hitNo description
SMARTSM007179.0E-18173221IPR001005SANT/Myb domain
PROSITE profilePS5129420.96173223IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-21175221IPR009057Homeodomain-like
CDDcd001671.71E-13176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MENSRGASAF HPYQNLPKNN LHVLQPNLPL TAIDRFLLGH ENYFSPLSGA NATSSHANEV  60
SWPTLEPSFM ELGYFLHEQS AINYMDDHQE NIMIVEAESS QTNKKESVKK AKEGYSTTNL  120
IKGQWTDEED RKLLRLVKQF GVRKWAQIAE KMEARGGKQC RERWHNHLRP DIKKDSWSEE  180
EELMLVEAHK QLGNRWAEIA KRIPGRTENA IKNHWNATKR RQNSRRNKNR KNQQVGQNEG  240
KHRSNVLQDY IRSKYFNDDS SSTATSHQEC LHYHTNTITP TNSTTTNATP SYSNDDSTSL  300
LTHQTYDEEL QFMQNLFGKN SILDNNGAKA IDHSMEAKVT QNLFDNNNSS SSFSAFSSLD  360
FSSDPLASET NITTKRVIHD AENYMNDYYK ESALHCPDLY LSYLLDASTY SSMPFPEASG  420
YGSMNMGMLM NQGCCSSGNN KEVDFMEMAS SNSQFSQGNF TKPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-441192224107B-MYB
1mse_C4e-441202222104C-Myb DNA-Binding Domain
1msf_C4e-441202222104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-53HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435339.11e-180PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1S3X5Z31e-178A0A1S3X5Z3_TOBAC; transcriptional activator Myb-like
STRINGXP_009626870.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-61myb domain protein 119