PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03526g04037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 527aa    MW: 58808.7 Da    PI: 7.3521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03526g04037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.51.6e-121141535
                      GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              ++t TplWR+gp  ++ LCnaCG ++r kg+
  Peinf101Scf03526g04037.1 11 HATGTPLWRNGPPEKPILCNACGSRWRTKGT 41
                              6899********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-4153IPR000679Zinc finger, GATA-type
PfamPF003202.7E-101141IPR000679Zinc finger, GATA-type
CDDcd002021.37E-111155No hitNo description
SuperFamilySSF577168.55E-71245No hitNo description
Gene3DG3DSA:3.30.50.101.2E-81241IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.3E-9276366IPR028020ASX homology domain
PfamPF165509.4E-9297374IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MLPVSGNHKI HATGTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH  60
RVSRFKSMSM KNKEAKVLKR KQSHDNAEVL TPPDYNLGFR KSLEEDTSNR SSSGSAFSNS  120
ESCAQFGSAE ASDLTGTAQS NIWDTTVPSR KRTCFNRPKP SSVEKLTKDL YTILHEQQGS  180
CFSACSEEDL LFESDKPMVS VEIGHGSMLI RHPSSIGRDD ESEVSSLSVD NKHRAVNDAY  240
SRSTTPPVNN SKGVNSLNLG TERTKKPTGQ AVQQDQIKRN KDHLEKLQIL GHHNSPLRYI  300
DMKDILNYEE FMRHLSSDEQ KQLLKYLPPA DSFAPPDSLR SMFESSQFEE SLSSFQTLLA  360
EGVFDNSLSG VKLEDCRTLK RFILCYLAKS KWVEQYNLIK DTKYKSSSSG SEVAGEASAI  420
GTSYSANVNR QRDEQHLKYS GAKTTMKIPK RVVMKSIYEQ KEIADNDSSC FSSPKSSFAL  480
PSESSSLVLD SFRSANENSD QDLLLDVPSN SYFPQAELLL PTSSFTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-145HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254133.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-136GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1J6II940.0A0A1J6II94_NICAT; Gata transcription factor 26
STRINGXP_009789570.10.0(Nicotiana sylvestris)
STRINGXP_009613626.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-123GATA transcription factor 26