PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03526g04018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Trihelix

Protein Properties

Length: 417aa MW: 46893.8 Da PI: 8.977

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03526g04018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.8	6e-18	34	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt++e laLiea+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ Peinf101Scf03526g04018.1 34 CWTQEEALALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPPKTSAQCRHKMEKLRQRYRAEKQRSLVNpNGRFFSSWF 118 8**********************************97776677778999****************9987764566778999 PP trihelix 81 yfdqle 86 ++d+++ Peinf101Scf03526g04018.1 119 FYDNMD 124 999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-19	33	126	No hit	No description
PROSITE profile	PS50090	6.644	35	95	IPR017877	Myb-like domain
SMART	SM00595	5.2E-10	42	131	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MTSPNIDTTT TTAVTETTTA APPPPPVRRF PPPCWTQEEA LALIEAYRER WYALRRGYLR 60 TADWDAVAAA VTSRCPDASP PKTSAQCRHK MEKLRQRYRA EKQRSLVNPN GRFFSSWFFY 120 DNMDAMENNT TVSAIRSNYQ INEQPSGGGD GYAMKTIIDH NLLKLKINNV PKDDVRSHTN 180 LMLNNHGVVG RNSDKSNYGS RIPNGYSPYM AMGYEQPHDG EFGSSVRMKA KRFNGSSNNA 240 GFDCDEGSEY NGSGNGNGSD GFHHVRNMMG GVSSSRRTSY GGGNVEVNND SRFSSPGVSR 300 LGKKGVKRGR VDPMEEMVLS IKLLGEGFMK MEKMKMEMAQ EVEQMRMEME MKRNEVILES 360 QKQIVEAFVK VLSEEMEMKR NEVILESQKQ IVEAFVKVLN EVNKNNKNVK TVSPDES

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MTSPNIDTTT TTAVTETTTA APPPPPVRRF PPPCWTQEEA LALIEAYRER WYALRRGYLR  60
TADWDAVAAA VTSRCPDASP PKTSAQCRHK MEKLRQRYRA EKQRSLVNPN GRFFSSWFFY  120
DNMDAMENNT TVSAIRSNYQ INEQPSGGGD GYAMKTIIDH NLLKLKINNV PKDDVRSHTN  180
LMLNNHGVVG RNSDKSNYGS RIPNGYSPYM AMGYEQPHDG EFGSSVRMKA KRFNGSSNNA  240
GFDCDEGSEY NGSGNGNGSD GFHHVRNMMG GVSSSRRTSY GGGNVEVNND SRFSSPGVSR  300
LGKKGVKRGR VDPMEEMVLS IKLLGEGFMK MEKMKMEMAQ EVEQMRMEME MKRNEVILES  360
QKQIVEAFVK VLSEEMEMKR NEVILESQKQ IVEAFVKVLN EVNKNNKNVK TVSPDES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	5e-61	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362480.1	1e-140	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0V0IKW1	1e-139	A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRING	PGSC0003DMT400052836	1e-139	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-29	Trihelix family protein