PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03525g01020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 412aa    MW: 45676.8 Da    PI: 7.5218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03525g01020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-1672117147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg W + Ed +l+++v+ +G+ +W++Ia ++  gR++k+c++rw++ 
  Peinf101Scf03525g01020.1  72 RGHWRPAEDAKLKELVAIYGPQNWNLIADKLE-GRSGKSCRLRWFNQ 117
                               899*****************************.***********996 PP
2Myb_DNA-binding56.27.7e-18124167146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Peinf101Scf03525g01020.1 124 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 167
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.23167118IPR017930Myb domain
SMARTSM007173.8E-1471120IPR001005SANT/Myb domain
PfamPF002492.6E-1572117IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2872165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-2673125IPR009057Homeodomain-like
CDDcd001673.60E-1375116No hitNo description
PROSITE profilePS5129427.288119173IPR017930Myb domain
SMARTSM007172.1E-14123171IPR001005SANT/Myb domain
PfamPF002492.6E-14124166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-21126172IPR009057Homeodomain-like
CDDcd001671.11E-11126166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGMFYADMNS LSITSKNYVT SDGGVGEDSN ETFDLNASCC FNDEKTITMH SNFSSSNNGK  60
EIESGQSKLC ARGHWRPAED AKLKELVAIY GPQNWNLIAD KLEGRSGKSC RLRWFNQLDP  120
RINRRAFTEE EEERLMAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY  180
RRRKMGQFVY RRTTTSLVEE EDTSYVSSNS SGKEVVAATM KGENPTPIIS GQTAANPFAS  240
LKINNDGPSG WVVYGPNGSS HMAASAGEAA TPSTNVPHLS TYSPFCAPFD TLSGHCGNEV  300
MNMLKQSRSW DRQRETSNIS NQIITSQHHP TPSTLMMTSM QQSQYLQFPY SSYSDVTTAR  360
AQISSSPSIA AVVKEDRRSS SNSSSDNSQL CDQCETIAPP PPFIDFLGVG AI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33721727107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456515.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S3YWT30.0A0A1S3YWT3_TOBAC; transcription factor MYB86-like
STRINGXP_009781411.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-77myb domain protein 105