PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03511g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 155aa MW: 17554.2 Da PI: 6.9581 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.3e-11 | 44 | 129 | 6 | 94 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 t+ v + ++lp+k +e ++++ + + + We+++ y +s++ + + Wk+F+++n+Lk+gD +vF+l+ s Peinf101Scf03511g00011.1 44 TKTAVKPHYSMYLPRKMSKEL--PPAGA--PAVLTYGRKNWEMNF-YGANSNGKFSPTEWKKFADDNNLKVGDGLVFELSeCGtS 123 555666677788999987666..23332..3455678899*****.877778878899********************9842224 PP EE..EE CS B3 89 efelvv 94 + +++v Peinf101Scf03511g00011.1 124 KIHFKV 129 444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-14 | 35 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-12 | 36 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.053 | 39 | 135 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.21E-15 | 42 | 133 | No hit | No description |
SMART | SM01019 | 3.1E-6 | 43 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-10 | 43 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
LLRDPLILFQ SMKMPGYESS GIKEIDEGLY WPLSGKPYVD MILTKTAVKP HYSMYLPRKM 60 SKELPPAGAP AVLTYGRKNW EMNFYGANSN GKFSPTEWKK FADDNNLKVG DGLVFELSEC 120 GTSKIHFKVM ILRGDFPSEL LPEEEGATHD HPIRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630412.1 | 3e-70 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_009786634.1 | 5e-70 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_016490571.1 | 5e-70 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_016515131.1 | 3e-70 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S4BNV1 | 1e-68 | A0A1S4BNV1_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S4DNX0 | 7e-69 | A0A1S4DNX0_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1U7XI63 | 1e-68 | A0A1U7XI63_NICSY; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009786634.1 | 2e-69 | (Nicotiana sylvestris) | ||||
STRING | XP_009630412.1 | 1e-69 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-10 | B3 family protein |