PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03477g00016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 275aa    MW: 32050.6 Da    PI: 8.2784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03477g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111437223
                              EETTTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                              kC+ C + F+ k++L+ H++   H
  Peinf101Scf03477g00016.1 14 KCSACYRQFNKKEHLVEHMKIsyH 37
                              7******************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4061342IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.102.4E-7126176IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.102.6E-4178231IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDHRYESSET LRNKCSACYR QFNKKEHLVE HMKISYHSVH EPMCGVCRKH CRSFESLREH  60
LIGPLPKAEC ERIFKDRGCD ICLTILASRN ALRAHRESCQ SRPNNGLHYR MANLGIQDEL  120
RIDNSRGRVV ALACKMVGGG SDGSLDLCAR VCLIDEHERI IFHSYIKPNL PVTNYRDTAK  180
YPPLMKTSKL SNSLKYDIQI GVQDPYEDCV ATMKLYMRMK AQFHKKENYP LATDPQNKNN  240
FASWRQNELE RMSPEQLLDF SRSDYYCWCL DTQDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153571e-69AC215357.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0016A12, complete sequence.
GenBankAC2154151e-69AC215415.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0190P16, complete sequence.
GenBankAC2154301e-69AC215430.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0236E02, complete sequence.
GenBankHG9754411e-69HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-69HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758098.11e-117PREDICTED: RNA exonuclease 4
TrEMBLA0A314ZAN11e-146A0A314ZAN1_PRUYE; RNA exonuclease 4
STRINGXP_004142474.11e-126(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA432723