PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03268g00006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 192aa MW: 21541.7 Da PI: 8.1255

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03268g00006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v ++G ++W++Iar ++ gR++k+c++rw + Peinf101Scf03268g00006.1 35 KGPWSQDEDTVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 80 79****************************.*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.719	30	85	IPR017930	Myb domain
SMART	SM00717	2.6E-14	34	83	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	35	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.79E-17	36	91	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-22	36	91	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-13	37	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEEAEQSDFK LIDAAVNGGD TMAVDENNGG GGKVKGPWSQ DEDTVLSELV SKFGARNWSL 60 IARGIPGRSG KSCRLRWCNQ LDPSVKRKPF TVITAAIWNI RNKLVHFHSV TSDSVFFAPR 120 AHISKLCKWF RNVNGIVFAT MFDIISVTLL KLSDYNWICN FICFESELEN LFLFSKSRCL 180 GKIASENVML DP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-16	34	91	6	63	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16833	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	4e-30	myb domain protein 109