PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03230g00020.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Nin-like

Protein Properties

Length: 472aa MW: 54961.5 Da PI: 6.8783

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03230g00020.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.4	2.9e-18	290	338	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e l+++F ++ kdAAk L v++++LKr CR+y I+RWPh k +++ Peinf101Scf03230g00020.1 290 GITREILEQHFGMERKDAAKALHVSVSTLKRMCREYDISRWPHHKTRKV 338 6999*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.56	277	361	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-19	291	338	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-14	379	470	No hit	No description
SMART	SM00666	4.5E-15	387	469	IPR000270	PB1 domain
PROSITE profile	PS51745	21.226	387	469	IPR000270	PB1 domain
Pfam	PF00564	5.8E-17	388	468	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.1E-14	389	467	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MEHEYQKPSD VIDEMPCPLD WCMSKRPSEL YTKWTFWSSR TNDELDYQCN TMSEFDHPDA 60 APVVPSYTGI YRDTIKSIFQ RNPFNCFCFI QFWVPVKVNG LTFLSTADQP FALTNILDKR 120 LCSYRKLCLH TLIPIDINDA NGESHLGPPG RVFIRGFPEY SSNIQSYSTA EFPLLQHAIQ 180 LGIQSYYAVP LFKLHENHCL GVFEIASTYK YYFQHFFEHP TEDAVTNRRR AGVDVAHDYT 240 EIEKDTSEMM QPGLHIELPN VEIDSRGKAR INDKLEHKEK IIQRIVKDHG ITREILEQHF 300 GMERKDAAKA LHVSVSTLKR MCREYDISRW PHHKTRKVNH HATKGAALQG VEPYMEDQER 360 PNLSQEKGID CLAHKRSPAT SKPCDTVMTL KVKYRDHTIK FKLTPESTRV ELQREVEKRL 420 KISLEKFSIK YQDEDDEWIT IATDSDMRDG MEELRSLKRT PMRLLVTPNP DA

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MEHEYQKPSD VIDEMPCPLD WCMSKRPSEL YTKWTFWSSR TNDELDYQCN TMSEFDHPDA  60
APVVPSYTGI YRDTIKSIFQ RNPFNCFCFI QFWVPVKVNG LTFLSTADQP FALTNILDKR  120
LCSYRKLCLH TLIPIDINDA NGESHLGPPG RVFIRGFPEY SSNIQSYSTA EFPLLQHAIQ  180
LGIQSYYAVP LFKLHENHCL GVFEIASTYK YYFQHFFEHP TEDAVTNRRR AGVDVAHDYT  240
EIEKDTSEMM QPGLHIELPN VEIDSRGKAR INDKLEHKEK IIQRIVKDHG ITREILEQHF  300
GMERKDAAKA LHVSVSTLKR MCREYDISRW PHHKTRKVNH HATKGAALQG VEPYMEDQER  360
PNLSQEKGID CLAHKRSPAT SKPCDTVMTL KVKYRDHTIK FKLTPESTRV ELQREVEKRL  420
KISLEKFSIK YQDEDDEWIT IATDSDMRDG MEELRSLKRT PMRLLVTPNP DA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015167196.1	1e-102	PREDICTED: protein NLP5-like
TrEMBL	A0A0V0ISB4	1e-100	A0A0V0ISB4_SOLCH; Uncharacterized protein
TrEMBL	M1DDC4	1e-101	M1DDC4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400082373	2e-98	(Solanum tuberosum)
STRING	PGSC0003DMT400087201	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10406	5	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	2e-21	Nin-like family protein