PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03171g03003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 59252.1 Da PI: 6.5086 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 459.5 | 2e-140 | 163 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l+++L++cA+avs+gdl aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e + s e l+++++++ Peinf101Scf03171g03003.1 163 LKHVLIACAKAVSDGDLLTAQLLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHVLY 244 689******************************************************************9...9*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 e++P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+ Peinf101Scf03171g03003.1 245 EICPYFKFGYMSANGAIAEAMKDENRVHIIDFQITQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGQRLSKL 329 ****************************************************************998899999************ PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 Ae+++vpfef++ +a + +d+++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F Peinf101Scf03171g03003.1 330 AEAFKVPFEFHA-AAMSGSDVQPENLGIRPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAF 413 ************.899********************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 + rfle+l+yy+a+f+s++++lpr+++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k Peinf101Scf03171g03003.1 414 FPRFLETLDYYTAMFESIDMTLPRAHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIK 498 ************************************************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll+ +++ yr+ee++g+l+lgW++r Lv+ +aW+ Peinf101Scf03171g03003.1 499 TLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 533 *******5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 71.496 | 137 | 514 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-138 | 163 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MQASQRIRRS AMSNTLYYQP VQKAEPYCLP QFQSLDNHLS YINGSHGGNN SFQTATGSYA 60 SHHSPATASF SSNGSPICHQ ESQSNLSDAR KSPDTNYGSP ISGSCITDDV NDFMSKLKEL 120 ETVMLGPDSD FLESYDNSLP SSIASPEINS WRQMMEATPR RDLKHVLIAC AKAVSDGDLL 180 TAQLLISELR QMVSVSGEPI QRLGAYILEG LVARLAASGS SICKSLRCKE PASFELLSYM 240 HVLYEICPYF KFGYMSANGA IAEAMKDENR VHIIDFQITQ GSQWVTLIQA FAARPGGPPH 300 IRITGIDDST SAYARGGGLN IVGQRLSKLA EAFKVPFEFH AAAMSGSDVQ PENLGIRPGE 360 ALAVNFAFTL HHMPDESVST ENHRDRLLRM VKNLNPKVVT LVEQESNTNT AAFFPRFLET 420 LDYYTAMFES IDMTLPRAHK ERINVEQHCL ARDVVNIIAC EGIERVERHE LLGKWKSRFR 480 MAGFSPYPLS SLVNATIKTL LESYSDKYRL EERDGALYLG WMNRDLVASC AWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-60 | 170 | 532 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-60 | 170 | 532 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-60 | 170 | 532 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250098.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_019250099.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1J6I6W3 | 0.0 | A0A1J6I6W3_NICAT; Scarecrow-like transcription factor pat1 | ||||
STRING | XP_009784447.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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