PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03060g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 26233 Da PI: 10.009 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 38 | 88 | 41 | 99 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 g++W vkl ++ + +++GW++Fv++n+L+ g ++vFk++g++ef v++f++ Peinf101Scf03060g00006.1 38 FXGKKWLVKL--NG----HRFKEGWEKFVEENDLELGNILVFKHEGDMEF--EVTIFDS 88 2356666666..44....5599**********************999999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.606 | 1 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-16 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.71E-12 | 4 | 87 | No hit | No description |
Pfam | PF02362 | 2.3E-9 | 4 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.44E-15 | 4 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-4 | 8 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-9 | 142 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-7 | 143 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.24 | 145 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MHKLPIGFLK YLKGRENEHA VLRRVGKKWL VKLNGHRFXG KKWLVKLNGH RFKEGWEKFV 60 EENDLELGNI LVFKHEGDME FEVTIFDSSH CEKECELPQQ GLDEREEEKD LRRNETEKPE 120 SKIKTSVKAF SKLGATKDKH LSHPHFICII RPYCLSTTFL VIPKQFARKN KLNNRKCTIS 180 MRDEQRSWTF SLYTSGRNTY FGRGKYVGKD APGIREALDK LME |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168741.1 | 2e-69 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A1S4B7K8 | 7e-67 | A0A1S4B7K8_TOBAC; B3 domain-containing protein REM17-like | ||||
STRING | XP_009792889.1 | 2e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 4e-18 | B3 family protein |