PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03039g06035.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 287aa MW: 31358.9 Da PI: 10.264

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03039g06035.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.4e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l+ +v ++G+g W+tI + R+ ++k++w+++ Peinf101Scf03039g06035.1 5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEfsgvlYMRSNVDLKDKWRNL 56 79*********************************99*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.406	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-15	2	70	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-14	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	1.62E-18	6	56	No hit	No description
SuperFamily	SSF46785	2.01E-17	117	195	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.1E-15	117	182	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.739	119	187	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.3E-15	119	187	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	8.9E-9	124	180	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEFSGV LYMRSNVDLK DKWRNLSVMA 60 SGWGSREKAR LALKRMNQAR NQDESSLAVS VAQSDGEVAE ARLAATSTGS PQIGGSKRSI 120 VRLDNLIMEA ISNLKEPGGS NKTTIATYIE DQYWAPPNFK RLLSAKLKYL AASGRLIKMK 180 RKYRIAPISA LSDRRRIPYV NRDDINMLTK APVDLELAKM RSMAHQEAAA AAAQAVAAAD 240 TALAEAEEAA READAAEADA EAAQAFAEAA MMTLQGRSTP RMVRNLY

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR780107	2e-31	KR780107.1 Rehmannia glutinosa single MYB histone protein (MYB31) mRNA, complete cds.
GenBank	KR780108	2e-31	KR780108.1 Rehmannia glutinosa single MYB histone protein (MYB32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606142.1	1e-139	PREDICTED: telomere repeat-binding factor 1
Refseq	XP_009606143.1	1e-139	PREDICTED: telomere repeat-binding factor 1
Refseq	XP_009606145.1	1e-139	PREDICTED: telomere repeat-binding factor 1
Refseq	XP_009606146.1	1e-139	PREDICTED: telomere repeat-binding factor 1
Refseq	XP_009606147.1	1e-139	PREDICTED: telomere repeat-binding factor 1
Refseq	XP_016476120.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016476121.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016476122.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016476123.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016476125.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016476126.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016501292.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Refseq	XP_016501293.1	1e-139	PREDICTED: telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	1e-93	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A1S4AHF7	1e-137	A0A1S4AHF7_TOBAC; telomere repeat-binding factor 1-like
TrEMBL	A0A1S4CJC8	1e-137	A0A1S4CJC8_TOBAC; telomere repeat-binding factor 1-like
STRING	XP_009606142.1	1e-138	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2864	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-86	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]