PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03038g00063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 131aa MW: 14505.9 Da PI: 4.2054 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2e-09 | 20 | 50 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT eEd llv+++ +G g+W+ a++ Peinf101Scf03038g00063.1 20 RGPWTVEEDTLLVHYISHHGEGRWNILAKRA 50 89***********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.58E-8 | 15 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.306 | 15 | 65 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 18 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-8 | 20 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-6 | 22 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MTSLSKSSSS SSDDDIGLRR GPWTVEEDTL LVHYISHHGE GRWNILAKRA EPFNISKASI 60 SECSNLIPPG DSGLNTFIKA HFPLDGESYD MDTFSPATCS FKDVLYYDQM SGENNAPGDV 120 LADSFWSMDE F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538949 | 3e-35 | AJ538949.1 Nicotiana tabacum cDNA-AFLP-fragment BT3-M23-017. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024930031.1 | 5e-20 | transcription factor MYB62-like | ||||
TrEMBL | B9IE45 | 5e-16 | B9IE45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03770.1 | 8e-17 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.2 | 5e-13 | myb domain protein 116 |