PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03005g04018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 113aa    MW: 12997.8 Da    PI: 4.2159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03005g04018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-101241130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              rg W +eEd++l+++v+ +G g+W+tI+++
  Peinf101Scf03005g04018.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEK 41
                              799************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.078752IPR017930Myb domain
SuperFamilySSF466891.2E-8741IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-11741IPR009057Homeodomain-like
PfamPF002491.7E-71241IPR001005SANT/Myb domain
CDDcd001674.63E-61555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MKDQEVKARM KRGFWKPEED LILKNCVETH GEGNWATISE KSARNQEVAT KTVLDSWIEE  60
MQDFNCSLLS PLPMNNVAFL QDEPFLPILD DIVLLEAFTS TGKEVWPDIQ PFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220542e-75AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275316.17e-37transcription factor MYB82-like
TrEMBLQ9FZ122e-35Q9FZ12_SOLTU; Tuber-specific and sucrose-responsive element binding factor
STRINGPGSC0003DMT4000794163e-36(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-14myb domain protein 82