PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02809g00011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

CAMTA

Protein Properties

Length: 876aa MW: 98463.5 Da PI: 8.539

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02809g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	95.4	4.7e-30	16	114	3	92
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg........v 78 +e k rwl+++ei+aiL n + +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LK +g v Peinf101Scf02809g00011.1 16 EEaKMRWLRPNEIHAILCNSKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKTQGspatsvakV 100 45599**********************************************************************9777776665 PP CG-1 79 evlycyYahseenp 92 + +Y++s+++p Peinf101Scf02809g00011.1 101 SPATPVYSNSSSDP 114 55666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	44.899	11	146	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.0E-35	14	210	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.6E-25	17	94	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	9.8E-11	335	422	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.05E-14	520	630	No hit	No description
SuperFamily	SSF48403	9.48E-16	520	634	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.0E-6	521	600	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-15	521	633	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.743	538	642	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	6.4E-6	571	600	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.594	571	603	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.83E-5	712	784	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	718	744	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	18	733	755	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	734	763	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.24	736	754	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0026	756	778	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.688	757	781	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.5E-4	758	778	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	835	857	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.517	837	865	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MFPVACADLD IPSIMEEAKM RWLRPNEIHA ILCNSKYFNI FVKPVNLPTS GTIVLFDRKM 60 LRNFRKDGHN WKKKKDGKTV KEAHEHLKTQ GSPATSVAKV SPATPVYSNS SSDPSDPSSW 120 VLSEECNSVD ERAYGASQHA QLEPNRDVTV KNHEQRLLEI NTLEWDELLA PGDPNKLIAT 180 QEGNVDSGGG RASVGQQNQC EVNGYSLNVS RANIQLASLD GSLSVSRVPI ASLESYVGQV 240 SGSETVNINP SNGMSFRSGD GQMTSNFHNN EPRVLPVGTG DSFDGLNKDG LQTQDSFGRW 300 MNYFISDSPG SADEMMTPES SVTIDQSYVM QQIFNITEIA PAWALSSEET KILVIGHFPG 360 GQSQLARSNL LCVCANVCFP AEFVQPGVYR CIIAPQSPGL VNLFLSFDGN TPISQVMTFE 420 FRAPSARKWT ASPEDQSNWD EFRVQMRLAH LLFSTSKSLS IFSSKVQQDS LRDAKRFVRK 480 CAHITDTWSY LIKSIEDKKL PIPHAKDCLF ELSLQTKFHE WLLERVVEGC KKLERDDQGQ 540 GVIHLCAILG YTWAVYPFSW SGLSLDYRDK GGWTALHWAA YYGREKMVAT LLSAGAKPNL 600 VTDPTSENPG GSTAADLASK NGFEGLGAYL AEKALVEHFK DMTLAGNVSG SLQTTTEPIN 660 PGNFTDEELY LKDTLAAYRN AADAAARIQA AFREHSFKVR TKVVESLNPE MEARNIVAAM 720 KIQHAFRNYE SRKKLAAAAR IQYRFRTWKM RKDFLNMRRQ AIKIQAVFRG FQVRRQYRKI 780 CWSVGVLEKA VLRWRLKRKG FRGLQVQSSP TVDIRPDSDV EEDFFRASRK QAEERVERSV 840 VRVQAMFRSK QAQEEYRRMK LEYNSATLEY ERVSQS

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MFPVACADLD IPSIMEEAKM RWLRPNEIHA ILCNSKYFNI FVKPVNLPTS GTIVLFDRKM  60
LRNFRKDGHN WKKKKDGKTV KEAHEHLKTQ GSPATSVAKV SPATPVYSNS SSDPSDPSSW  120
VLSEECNSVD ERAYGASQHA QLEPNRDVTV KNHEQRLLEI NTLEWDELLA PGDPNKLIAT  180
QEGNVDSGGG RASVGQQNQC EVNGYSLNVS RANIQLASLD GSLSVSRVPI ASLESYVGQV  240
SGSETVNINP SNGMSFRSGD GQMTSNFHNN EPRVLPVGTG DSFDGLNKDG LQTQDSFGRW  300
MNYFISDSPG SADEMMTPES SVTIDQSYVM QQIFNITEIA PAWALSSEET KILVIGHFPG  360
GQSQLARSNL LCVCANVCFP AEFVQPGVYR CIIAPQSPGL VNLFLSFDGN TPISQVMTFE  420
FRAPSARKWT ASPEDQSNWD EFRVQMRLAH LLFSTSKSLS IFSSKVQQDS LRDAKRFVRK  480
CAHITDTWSY LIKSIEDKKL PIPHAKDCLF ELSLQTKFHE WLLERVVEGC KKLERDDQGQ  540
GVIHLCAILG YTWAVYPFSW SGLSLDYRDK GGWTALHWAA YYGREKMVAT LLSAGAKPNL  600
VTDPTSENPG GSTAADLASK NGFEGLGAYL AEKALVEHFK DMTLAGNVSG SLQTTTEPIN  660
PGNFTDEELY LKDTLAAYRN AADAAARIQA AFREHSFKVR TKVVESLNPE MEARNIVAAM  720
KIQHAFRNYE SRKKLAAAAR IQYRFRTWKM RKDFLNMRRQ AIKIQAVFRG FQVRRQYRKI  780
CWSVGVLEKA VLRWRLKRKG FRGLQVQSSP TVDIRPDSDV EEDFFRASRK QAEERVERSV  840
VRVQAMFRSK QAQEEYRRMK LEYNSATLEY ERVSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628583.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A344X390	0.0	A0A344X390_NICTO; Calmodulin-binding transcription activator 5
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]