PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf02701g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 309aa MW: 35969.1 Da PI: 7.1586 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.1 | 4.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifss+gkl+ey+s Peinf101Scf02701g01019.1 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 58.2 | 3.5e-20 | 82 | 167 | 11 | 96 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e + +l+ elak+++ + nLq ++ +++G+dL+ +++eL++Le+qLe++l+kiR++K el+ +q+e+l+k ek+l++en+++ Peinf101Scf02701g01019.1 82 EDNRVQLYDELAKMRRDTLNLQLSLQRYKGDDLSLAQHEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMY 166 45566799*************************************************************************9887 PP K-box 96 k 96 + Peinf101Scf02701g01019.1 167 Q 167 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.03E-46 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 7.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.01 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-18 | 85 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS KGKLFEYCSQ 60 PHSMSQIISR YLQTTGASLP VEDNRVQLYD ELAKMRRDTL NLQLSLQRYK GDDLSLAQHE 120 ELNELEKQLE HALNKIRARK LELMQQQMEN LKKTEKMLEK ENHDMYQWLM NNQMYKQESA 180 VMDHEDHHHH HEHQQAITEL NLLGEQPLLS HFTFFGDQEQ PSTSTVNHFA STSLTSPPAN 240 SISPYRLQPS HPNLQDSHTD HALTTRRSKC WDLLIIVPQC LWLCVYTGLW AYMHPNEVLL 300 MMGMLINDP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6bz1_A | 2e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 73 | 1 | 71 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF335242 | 0.0 | AF335242.1 Petunia x hybrida MADS-box transcription factor FBP24 (FBP24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262752.1 | 1e-142 | PREDICTED: MADS-box protein FBP24 | ||||
Refseq | XP_019262753.1 | 1e-142 | PREDICTED: MADS-box protein FBP24 | ||||
Swissprot | Q9ATE5 | 0.0 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A314L961 | 1e-141 | A0A314L961_NICAT; Protein transparent testa 16 | ||||
STRING | XP_009785850.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-64 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|