PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02670g00019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 296aa MW: 32144.3 Da PI: 6.0973

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02670g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.9e-33	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Peinf101Scf02670g00019.1 19 KPRLRWTTDLHERFVDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-31	16	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.434	16	76	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.2E-24	19	74	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.51E-16	19	75	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-8	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-16	117	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGIQINGGDP CLVLTSDPKP RLRWTTDLHE RFVDAVTQLG GPSKATPKAI MRTMGVKGLT 60 LFHLKSHLQK YRLGKQSQKD LDEASKDGLT ATYSLESPCS GGTPQQLPAS DLNEGYEVKE 120 ALRAQMEVQS KLHLQVEAEK HLQIRQDAEQ RYITMLEKAC KMLADQIIGG VVAEDDQETY 180 QGLGTKTQLS PFCNPLGLCP SESVDLVGVQ GPEEVSPRIH PQRTDCSTES CLTSHESPAG 240 LPLEGSSPGG RKRTLTGDSA HTSFVWGEAD MRSSAVRLLQ VNCFGITGSN VQNVSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	19	75	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU074307	1e-155	CU074307.9 S.lycopersicum DNA sequence from clone LE_HBa-203L19 on chromosome 4, complete sequence.
GenBank	HG975443	1e-155	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	1e-155	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571977.1	0.0	PREDICTED: uncharacterized protein LOC107870086 isoform X1
TrEMBL	A0A2G3CDT5	0.0	A0A2G3CDT5_CAPCH; Myb family transcription factor APL
STRING	PGSC0003DMT400070013	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	5e-70	G2-like family protein