PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02665g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23186.8 Da PI: 9.8432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.8e-15 | 85 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +g ++AeIrdp + k +r +lg++ t ++Aa a+++a+ k++g Peinf101Scf02665g00005.1 85 RYIGVRRRR-WGTFAAEIRDP---NrKGARLWLGTYETSKDAALAYDQAAFKIRG 135 699***777.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.0E-31 | 85 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 85 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 85 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-11 | 85 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 85 | 144 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.4E-11 | 86 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-22 | 94 | 145 | No hit | No description |
PRINTS | PR00367 | 9.4E-11 | 125 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSPADDNTFS LSEFDLLESI TQHLLNDSHF SEILTPVTSS NIIALPNSTP ASSFDHSSSE 60 QNSFESHEKS DSEEQTKGPP QHWRRYIGVR RRRWGTFAAE IRDPNRKGAR LWLGTYETSK 120 DAALAYDQAA FKIRGSKARL NFPHLIGSSN IAKPARVTSR RSSEPASSSD SSLSLHNEGT 180 RKRKLDMINS IAKARVFCHN LNLQMLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-25 | 86 | 149 | 6 | 69 | ATERF1 |
3gcc_A | 7e-25 | 86 | 149 | 6 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019241433.1 | 9e-77 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1J6JNR9 | 2e-75 | A0A1J6JNR9_NICAT; Ethylene-responsive transcription factor 13 | ||||
STRING | XP_009781921.1 | 2e-72 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 8e-29 | ethylene-responsive element binding factor 13 |