PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02652g00054.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 456aa    MW: 49764.2 Da    PI: 6.6933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02652g00054.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20230279255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Peinf101Scf02652g00054.1 230 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 279
                               7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-33230288IPR001471AP2/ERF domain
PROSITE profilePS5103225.712230287IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22230288IPR016177DNA-binding domain
CDDcd000183.58E-21230289No hitNo description
SMARTSM003806.3E-37230293IPR001471AP2/ERF domain
PfamPF008474.1E-14230279IPR001471AP2/ERF domain
PRINTSPR003671.3E-11231242IPR001471AP2/ERF domain
PRINTSPR003671.3E-11253269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MCFIKVANSR KSSEYGRVSD TEHTETTTTT TTTVTTATEG RGQPYEQSNQ FFEELIQQQI  60
QQEADYLLSS YSSSAMPMFS VYSQTREMTA MVSALTHVVS GQNYRPDIGG GGGAGGGSGV  120
YSANSPSSAY SSSSSGSRAG QKRSRDQEES VSQISEQRVY GGFGEFRSTS MGMPSSSVKA  180
EEATSMVAPS NTTISTITTV PPFITTTTTE VATTATAAGS SEEAGERKRR YRGVRQRPWG  240
KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RLLPQLQQTS  300
QQPITTRLAT SSSTTTSSQF PFMAPISQPA TYFQQQQQQQ QPMQSSEMTR DYWEYSQLLQ  360
NPGDFSSQQQ QQPSSLLEQM FFASSMAVLH SNTYPSSSSL ATSAASSTSY PLLFSDQQSS  420
YYRPQANQNQ GTSSSSSSNF SAPFWTSSSH YPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23229290163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787362e-54KF278736.1 Coffea arabica ethylene response factor 11 mRNA, partial cds.
GenBankKF7435522e-54KF743552.1 Coffea arabica ERF transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229916.11e-155PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A314KM121e-154A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009606951.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-23ethylene response factor 110