PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02588g00007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 644aa    MW: 72526.3 Da    PI: 5.2426
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02588g00007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.2e-2297197198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+kvlt sd+ ++  l++p k + ++         k++  ++lt++d+sg +W++k+ + ++++r++lt+GW+ Fv++++L +gD
  Peinf101Scf02588g00007.1  97 FCKVLTASDTKSNWGLSIPQKDVVKCfpvldmsRDKPT--QELTVKDLSGMEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVAGD 179
                               99*****************************8543433..48******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                                vvF +   +++  +++++ 
  Peinf101Scf02588g00007.1 180 LVVFLR--GENGDVHIGFRH 197
                               *****3..367767887765 PP
2Auxin_resp28.37.4e-11222273154
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds 54 
                               a++a++ + +F+v+ +P++  s+F+++++k+++a+++ + v m fkm     +s
  Peinf101Scf02588g00007.1 222 ASDALAAQRPFSVYCKPQT--SQFIISLNKYLEAINRGLGVSMTFKMPSGVANS 273
                               5678999**********95..9*************************8766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2992202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-3592206IPR015300DNA-binding pseudobarrel domain
CDDcd100176.00E-2195196No hitNo description
SMARTSM010191.7E-1897199IPR003340B3 DNA binding domain
PROSITE profilePS5086312.81697199IPR003340B3 DNA binding domain
PfamPF023629.4E-2097196IPR003340B3 DNA binding domain
PfamPF065072.1E-8222272IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MWSIKQNHVT SEGDDGLYRE LWKAFAGPSM EIPRVGELGD ILLLFMRLNI TAEYLEGVLQ  60
INVHETYDSV LCYTVQQTEP TNPDFCHELP MPQIHSFCKV LTASDTKSNW GLSIPQKDVV  120
KCFPVLDMSR DKPTQELTVK DLSGMEWRFK HVFGGHPRRH LLTNGWSAFV NSKKLVAGDL  180
VVFLRGENGD VHIGFRHQSC QKSSIEVPTA SSLDIKGVLA VASDALAAQR PFSVYCKPQT  240
SQFIISLNKY LEAINRGLGV SMTFKMPSGV ANSHESFACT TNEKDQMEIN RFLHNTNEYL  300
NEDGEQMEDA EAIVYSPPQH CIAPSEIGEK RHSDTIYLPP VKGNVQSGEE SKPEHNEVLN  360
PAEIVTIRGT EERKASTSSS RSFNPIQEED LEGAEIIKDI LPIVSQNLPL DYLMSSNTEN  420
EDFLPIMQDS DRWQNVQGTD FPLPVRSPSG NHEMQTFSLK DQQSSSKVVH PTSISSQIPY  480
EGPGHADEKV HWEGYHVARR YIPILNKLIS HYPCTLSSFK ATSSIFQSMC LEILAELVYL  540
LGQFTMGSMD IKYLSEAKRY LRDLKLSGVE IGWLEKRLAK VEDVFTMKRL SIRRQELILG  600
IEDTMATLRL MNEELGSLNK ELQKLSSEIN VTTPAEDHSI LEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-581526617296Auxin response factor 1
4ldw_A7e-581526617296Auxin response factor 1
4ldw_B7e-581526617296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230990.10.0PREDICTED: uncharacterized protein LOC109211859 isoform X1
TrEMBLA0A314KI650.0A0A314KI65_NICAT; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1534468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.13e-65auxin response factor 11