PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02569g02016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 428aa MW: 49271.9 Da PI: 8.7506 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.4e-06 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H Peinf101Scf02569g02016.1 55 YVCEICNLSFQREQNLQMHRRRH 77 9*********************9 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.6e-05 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ Peinf101Scf02569g02016.1 141 WVCEKCSKGYAVQSDYKAHIKTC 163 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.9E-6 | 54 | 78 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.63E-6 | 54 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-5 | 55 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.9E-4 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.699 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 132 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.63E-6 | 136 | 161 | No hit | No description |
SMART | SM00355 | 58 | 141 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLASNSFLFP APSSEPFSEE NGFIMKRKRR PAGTPDPDAQ VVYLTAEMLM ESDRYVCEIC 60 NLSFQREQNL QMHRRRHKVP WKLKKKEEEK NNTIENMEQV KKRVYVCPEP SCVHHDPCHA 120 LGDLVGIKKH FRRKHSNYKQ WVCEKCSKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE 180 TFIEHQDSCK PQSTRECDVL KPKQSLLPQT TYNPPHCFSN YSNSSGFGKE PHHPNHYSRM 240 PKNTTHPNLD LELFTSPTNQ NTQHYSSIQN EHPQQLNLSF DGKSHYQVQH NEDKKEGRGN 300 FQEKTFMEET AIQVLKLKGE ANQILKIAME QKAMAAEKRQ EAKCLIELAN LEMAKAREIK 360 QQLLAEYSTA DQLLKSCATM KSVGSHVMQV TCSSCNKQLQ TVSKEAACKE VYPSLTNYLS 420 SATYRRWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 139 | 189 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 139 | 189 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 3e-71 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 3e-71 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616334.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Refseq | XP_016505250.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Swissprot | F4IPE3 | 1e-115 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A1S4CVU6 | 0.0 | A0A1S4CVU6_TOBAC; protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
STRING | XP_009616334.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-114 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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