PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02550g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 18302.9 Da PI: 8.9021 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.3 | 1.3e-19 | 5 | 52 | 1 | 48 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++ Peinf101Scf02550g00012.1 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRIYGASNVGKMLQR 52 6*********************************************97 PP | |||||||
2 | DUF260 | 50 | 8.5e-16 | 72 | 126 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++++e++r d+++sl+yeA +r+++P+yG+vg+i+ l+q++ +l+ +l ++++e Peinf101Scf02550g00012.1 72 YQQVQEHHRADVANSLYYEAYCRIKNPIYGCVGIISVLHQEIYNLQCQLTKVQAE 126 57889*********************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.307 | 4 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-32 | 5 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHRI YGASNVGKML QRKYSKNGIF 60 PHSNWCIFLL KYQQVQEHHR ADVANSLYYE AYCRIKNPIY GCVGIISVLH QEIYNLQCQL 120 TKVQAEISVL EAQAQTQAQQ GHQIELSPTI SGNSFGDQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-31 | 6 | 127 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-31 | 6 | 127 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 3e-57 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238658.1 | 2e-67 | PREDICTED: LOB domain-containing protein 24-like | ||||
TrEMBL | A0A1J6IQ34 | 2e-71 | A0A1J6IQ34_NICAT; Lob domain-containing protein 24 | ||||
STRING | XP_009780781.1 | 9e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-42 | LOB domain-containing protein 24 |