PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf02501g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 68aa MW: 7943.52 Da PI: 10.6752 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.9 | 1.5e-09 | 16 | 47 | 5 | 36 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaeva 36 +k r ++ +n++ KKA E+S+LC++e+a Peinf101Scf02501g00013.1 16 DKHSRDAALTHMQNTLCKKAMEISILCGIEIA 47 6778888999999*****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.367 | 4 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-10 | 5 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-6 | 16 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 68 aa Download sequence Send to blast |
MSFQMRKKID MRLTRDKHSR DAALTHMQNT LCKKAMEISI LCGIEIARPG IRQFYMVIQM 60 LNQLLTSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |