PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02501g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21498.7 Da PI: 7.6845 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.4 | 3.3e-12 | 6 | 41 | 5 | 40 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +k r v ++ +n++ KKA E+S+LC++e+a+iif Peinf101Scf02501g00003.1 6 DKHSRDVALTHMQNTLCKKAMEISILCGIEIAIIIF 41 78899*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0074 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.18 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-13 | 2 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-9 | 6 | 41 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MRLTRDKHSR DVALTHMQNT LCKKAMEISI LCGIEIAIII FRLGDPPVLY GNPDVESVVN 60 KFLKAQLTKC LSCRCMLCER ASCREERCKI VKKGKELQAN DENQNHVDGW FKRFTSKNFE 120 AADLGRVEQL NQKIDKLSKY LNNEIVLLQS AIGADDSNST EGMNLTGSED PKSVSEMSVA 180 SSSTISPNWL SL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-11 | AGAMOUS-like 29 |