PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02481g00049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 41345.3 Da PI: 5.2998 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.1e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wka Peinf101Scf02481g00049.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLSI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579***************************.89***************9888999****************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ ++ +glkk+Lvfy+gra +g ktdW+mhe+rl Peinf101Scf02481g00049.1 98 TGTDRPIYSSdCTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 *********967778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-57 | 12 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.614 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDEKVDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LSIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDCT KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTSSESVP PKKFLDKNFP PNDSWAICRI FKKTNSMANR 180 ALSYPWVTPL SDVASPPEVF NQSSNSIHFS SDNNDLLQGG LTDNFSALNA LSYKALNTMV 240 SRPSFVASPS SDVSYNFMFS SPEVSGSMFF NTSPALITDD IKASETIDFE GPEQQLNGFS 300 ISASQEMQRS ISMEDDEAGL RSNQDSNNDN ITQWENIRSS IGFPFSLTTS LADAWKPSLP 360 WDSPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-52 | 16 | 176 | 22 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122544 | 6e-97 | AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence. | |||
GenBank | AC226507 | 6e-97 | AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence. | |||
GenBank | EU161283 | 6e-97 | EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds. | |||
GenBank | HG975441 | 6e-97 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 6e-97 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600694.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-104 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S4CAZ4 | 0.0 | A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94 | ||||
STRING | XP_009600694.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
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