PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02476g00020.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 275aa MW: 30464.7 Da PI: 7.1055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02476g00020.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	170	206	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ +L +l+ + +K + a++L +A+ YI+ Lq Peinf101Scf02476g00020.1 170 EKLGDRITTLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 206 56778899999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.204	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	168	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-6	168	210	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-8	170	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MASGNPTNWW NNMMLNGNMH PPHESHQQLS SSSLQHFYGS SNFLADNPSQ DVPSRSWSQL 60 LLAGLSSDQE KSGMSHFHQY RKLENWEDQS LNSIQQYPLS SSFRVPVVDV KPEFVGQMYG 120 NYHHQDLPAV SSSPANSCVT TTLNFSCNNK SNKVEAKHQH PDHSSEVRKE KLGDRITTLH 180 QLVSPFGKTD TASVLSEAIG YIRFLQAQIQ ALSSPYLGNV AGSMGHTHQQ SESQHRVKDL 240 RSRGLCLVPI SCTQHVGSDT TVGDYWAPAL GGGYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224898.1	1e-135	PREDICTED: transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	7e-42	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A314KWA3	1e-133	A0A314KWA3_NICAT; Transcription factor bhlh68
STRING	XP_009628050.1	1e-132	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]