PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02467g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 350aa    MW: 39862.3 Da    PI: 6.5592
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02467g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05187206120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C k+F+r  n++ H+
  Peinf101Scf02467g00011.1 187 FSCPLCFKTFNRYNNMQMHM 206
                               89*****************9 PP
2zf-C2H214.59.9e-05271293123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +Cgk F  + + ++H +++
  Peinf101Scf02467g00011.1 271 FMCRKCGKAFAVRGDWRTHEKNC 293
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-6253291No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6267291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549271291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTDPYTNYFH GWFNNNLNPL FHFSSSSSSS TPFSSYNNCI LPSTNFQYNE YFQSSSPPNS  60
PPLKEPLPLL SLSPTRQVIQ DQDYSFNCTT MEVDNTSKEN KEESFISSSN YVDDQEDDEN  120
VSVALQLGLP NPSPDLISRL SSTNNEEINK EEDQVTVANG YSSTSTLHKG QYWIPTPAQI  180
LIGPTQFSCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCFCCAPGC  240
RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCT  300
CGSDFKHKRS LKDHIKAFGN GHAAYGIDCL EEEDEPASEI EQDNDHEPSN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-180HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226555.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A314KRZ60.0A0A314KRZ6_NICAT; Zinc finger protein wip2
STRINGXP_009780788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]