PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02425g00011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 1471aa MW: 163642 Da PI: 7.0021

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02425g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	1380	1403	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F+++ + +H+r+H Peinf101Scf02425g00011.1 1380 RCPieGCGKKFTSHKYALVHQRVH 1403 69999*****************99 PP
2	zf-C2H2	10.8	0.0016	1439	1465	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H Peinf101Scf02425g00011.1 1439 YKCKveGCGLTFRFVSDYSRHRRKtgH 1465 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.7E-13	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.661	16	57	IPR003349	JmjN domain
Pfam	PF02375	5.0E-14	17	50	IPR003349	JmjN domain
SMART	SM00558	5.9E-46	273	481	IPR003347	JmjC domain
SuperFamily	SSF51197	5.22E-26	274	353	No hit	No description
PROSITE profile	PS51184	33.823	276	481	IPR003347	JmjC domain
Pfam	PF02373	5.8E-17	306	363	IPR003347	JmjC domain
SuperFamily	SSF51197	5.22E-26	398	478	No hit	No description
Pfam	PF02373	7.2E-16	411	464	IPR003347	JmjC domain
SMART	SM00355	10	1356	1378	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.38E-6	1369	1416	No hit	No description
SMART	SM00355	0.024	1379	1403	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.175	1379	1408	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-5	1380	1407	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1381	1403	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-9	1408	1433	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0023	1409	1433	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	1409	1438	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1411	1433	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.5E-10	1419	1461	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-10	1434	1462	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.28	1439	1465	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.265	1439	1470	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1441	1465	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1471 aa Download sequence Send to blast
MKCVDIPEWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKKYV 60 VHTLNKSLSK CPDFDSEVKN RDPKGNVGSA VFTTRHQELG HCEKRRMKGG VVGGSQPLGA 120 QKQVWQSGEV YSLEQFEVKS KNFARSQLGG VKEVSPLAVE SMFWKSASEE PIYVEYANDV 180 PGSAFGEPEE GLFRYRRRRR RRQKRTMLGG NSLPSSGYKN GVGTSRSSAA CHSVETLSAP 240 LLTPSSNKTT NSSDFSSKGC SNAGEMEGSA GWKLANSPWN LQVIARSPGS LTRFMPDDIP 300 GVTSPMVYIG MLFSWFAWHV EDHELHSLNY LHMGSPKTWY AVPGDYAFSF EEVIRRHAYG 360 QNTDRLVGLT LWSSNDIQGK NLTGPSAGNE DLPEVPTPLS FTFGTAALTL LGEKTTLLSP 420 EVVVASGIPC CRLVQNPGEF VVTFPRAYHV GFSHGFNCGE AANFGTPQWL TVAKEAAVRR 480 AAMNHLPMLS HQQLLYLLTM SFVSSVPRYL LPGVRSSRLR DRQKEERELL VKKAFVEDIE 540 KENNLVKVLL QKSFCGNAVL WDVDMLPSSG KESELHKHVR ADASRGNDQS DNNDSRDLLD 600 QMNFYMENYS DFYVDDDVSC EFQIDSGTLP CIACGILGFP FMALVQPSKM AAKHLFPEDF 660 ENKQDYGALK HVESDSNLHL RSMIADYNRG STIKVMKLAV SDQHTCLWNT EFPLHAVDTM 720 ERNGGHFLDH DEVSMSAQPS GFAVSPHEGQ KSQSHHSLDT ENAALTSKVE LEKVWDVSRG 780 SLRPHIFCVE HAIQTEELLH TKGGANVLVI CHSDFQKIRA HAAIVAEEIG TTFKYNEISL 840 ANASQGHLSL IDLAIEDEEQ DKYAEDWTLK LNINLRHCVK AQRNCPLKKL KHAMILGGLF 900 SDTTPRSHSS SLDWQSRKVR SRRKCNNSTE STSLAHLQIE KVLDSGSTVD KQNARKGNIT 960 IQYSRKKYKF KSCSPAEVTR VIVDPFNVSI EEVLVADAKT MGTTLLRDEN AGSSSSGERF 1020 FSASDGKPGL QHEHEMVLVN RDQNGNLLAS QDAELLVTTL MVEFDEANGE ICTSEKLALE 1080 DKTCDTNSTS CHTERKSTGP ETSGETEIAH LTAPTCTTIS VVQSTANNEN LKENRDMTES 1140 GIRNKSAQPK EANFERDDRG ADDKAIMTRS LVPVNSSGSC TDGPSRSSNE QIEDQIPEQF 1200 ASGSEASDSE SLQNSVEQEI QIDNADQDVA VSDHVKLVEE ACPSAGSLEV MRETSSLEHS 1260 QIESDDDTSS AIVSRRAAKS GGKRRRELDL LTDDGCNIVG FVKSPCEGLR PRARKNVPES 1320 RADTKKPLEE KPTGKKVKRS LQSSNKDKKE QRKGTHRCDI EGCRMSFQTK VELQLHKRNR 1380 CPIEGCGKKF TSHKYALVHQ RVHQNDRPLK CPWKGCTMTF KWAWARTEHL RVHTGERPYK 1440 CKVEGCGLTF RFVSDYSRHR RKTGHYVDAA N

Sequence ? help Back to Top

Protein Sequence Length: 1471 aa Download sequence Send to blast

MKCVDIPEWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKKYV  60
VHTLNKSLSK CPDFDSEVKN RDPKGNVGSA VFTTRHQELG HCEKRRMKGG VVGGSQPLGA  120
QKQVWQSGEV YSLEQFEVKS KNFARSQLGG VKEVSPLAVE SMFWKSASEE PIYVEYANDV  180
PGSAFGEPEE GLFRYRRRRR RRQKRTMLGG NSLPSSGYKN GVGTSRSSAA CHSVETLSAP  240
LLTPSSNKTT NSSDFSSKGC SNAGEMEGSA GWKLANSPWN LQVIARSPGS LTRFMPDDIP  300
GVTSPMVYIG MLFSWFAWHV EDHELHSLNY LHMGSPKTWY AVPGDYAFSF EEVIRRHAYG  360
QNTDRLVGLT LWSSNDIQGK NLTGPSAGNE DLPEVPTPLS FTFGTAALTL LGEKTTLLSP  420
EVVVASGIPC CRLVQNPGEF VVTFPRAYHV GFSHGFNCGE AANFGTPQWL TVAKEAAVRR  480
AAMNHLPMLS HQQLLYLLTM SFVSSVPRYL LPGVRSSRLR DRQKEERELL VKKAFVEDIE  540
KENNLVKVLL QKSFCGNAVL WDVDMLPSSG KESELHKHVR ADASRGNDQS DNNDSRDLLD  600
QMNFYMENYS DFYVDDDVSC EFQIDSGTLP CIACGILGFP FMALVQPSKM AAKHLFPEDF  660
ENKQDYGALK HVESDSNLHL RSMIADYNRG STIKVMKLAV SDQHTCLWNT EFPLHAVDTM  720
ERNGGHFLDH DEVSMSAQPS GFAVSPHEGQ KSQSHHSLDT ENAALTSKVE LEKVWDVSRG  780
SLRPHIFCVE HAIQTEELLH TKGGANVLVI CHSDFQKIRA HAAIVAEEIG TTFKYNEISL  840
ANASQGHLSL IDLAIEDEEQ DKYAEDWTLK LNINLRHCVK AQRNCPLKKL KHAMILGGLF  900
SDTTPRSHSS SLDWQSRKVR SRRKCNNSTE STSLAHLQIE KVLDSGSTVD KQNARKGNIT  960
IQYSRKKYKF KSCSPAEVTR VIVDPFNVSI EEVLVADAKT MGTTLLRDEN AGSSSSGERF  1020
FSASDGKPGL QHEHEMVLVN RDQNGNLLAS QDAELLVTTL MVEFDEANGE ICTSEKLALE  1080
DKTCDTNSTS CHTERKSTGP ETSGETEIAH LTAPTCTTIS VVQSTANNEN LKENRDMTES  1140
GIRNKSAQPK EANFERDDRG ADDKAIMTRS LVPVNSSGSC TDGPSRSSNE QIEDQIPEQF  1200
ASGSEASDSE SLQNSVEQEI QIDNADQDVA VSDHVKLVEE ACPSAGSLEV MRETSSLEHS  1260
QIESDDDTSS AIVSRRAAKS GGKRRRELDL LTDDGCNIVG FVKSPCEGLR PRARKNVPES  1320
RADTKKPLEE KPTGKKVKRS LQSSNKDKKE QRKGTHRCDI EGCRMSFQTK VELQLHKRNR  1380
CPIEGCGKKF TSHKYALVHQ RVHQNDRPLK CPWKGCTMTF KWAWARTEHL RVHTGERPYK  1440
CKVEGCGLTF RFVSDYSRHR RKTGHYVDAA N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	3e-53	1354	1471	21	138	Lysine-specific demethylase REF6
6a58_A	3e-53	1354	1471	21	138	Lysine-specific demethylase REF6
6a59_A	3e-53	1354	1471	21	138	Lysine-specific demethylase REF6
6ip0_A	3e-53	263	495	144	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	3e-53	263	495	144	346	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	201	RYRRRRRRR
2	195	201	RRRRRRR
3	196	204	RRRRRRQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589507.1	0.0	PREDICTED: probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A1S3ZCI2	0.0	A0A1S3ZCI2_TOBAC; lysine-specific demethylase SE14
STRING	XP_009589507.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4835	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]