PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02422g01011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 670aa    MW: 74746.8 Da    PI: 5.4711
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02422g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-13128198166
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                               f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++  +W++++i+r++++r++lt+GW+
  Peinf101Scf02422g01011.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWS 198
                               99*****************************7555555.59******************************8 PP
2Auxin_resp85.98.4e-292002651983
                Auxin_resp  19 astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               as+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld vrWpnS+Wrs+k
  Peinf101Scf02422g01011.1 200 ASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDAVRWPNSHWRSVK 265
                               799**************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-35112198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-25121198IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-13127206No hitNo description
SMARTSM010191.9E-4128234IPR003340B3 DNA binding domain
PfamPF023623.0E-11128198IPR003340B3 DNA binding domain
PfamPF065072.5E-24200265IPR010525Auxin response factor
SuperFamilySSF542772.49E-7540618No hitNo description
PfamPF023095.1E-8541630IPR033389AUX/IAA domain
PROSITE profilePS5174524.501544628IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKLSTSGISQ QHAHEGEKKC LNSELWHACA GPLVCLPTLG SRVVYFPQGH SEQVAATTNK  60
EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TYLPVELGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QTPPCQELIA RDLHDIEWKF  180
RHIFRGQPKR HLLTTGWSVA SPSEFVIPLS KYIKAVYHTR VSVGMRFRML FETEESSVRR  240
YMGTITGIGD LDAVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL  300
RLKRPWYPGT SSFPENNSDT INGMTWLRGE AGEQGPHLMN LQSFGMLPWM QQRVDPTESY  360
QISHSQLQQK QPSNIPSPSF SKPDFADPNS KFSATVAPSG MPTVLGSLCS EGSTDLLNFN  420
RIGQQSVIVE QPPQKSWMSK FAHSQLNTYS NSSSLPAYGK DTSTSQETCS LDAQNQNLFG  480
ANVDSSGLLL PTTVSNVATT SIDADMSAMP LGASGFQNSL YGYVQDSSDL LHNAGQDDPP  540
TGTRTFVKVY KSGSVGRSLD ISRFNSYHEL RQELGQMFGI EGFLEEPQRS GWQLVFVDRE  600
NDVLLLGDDP WEAFVNNVWY IKILSPEDVQ KLGKEEVESL NRAALERMSS NSADGRDFMS  660
GLPSIGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-831728647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8354230.0JN835423.1 Nicotiana tabacum auxin response factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759402.10.0auxin response factor 8-like isoform X3
SwissprotQ9FGV11e-120ARFH_ARATH; Auxin response factor 8
TrEMBLA0A2H5MZZ90.0A0A2H5MZZ9_CITUN; Uncharacterized protein
STRINGXP_009789648.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1674122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.21e-123auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]