PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02382g09017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 247aa    MW: 28179.4 Da    PI: 7.4061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02382g09017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00083129151123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C +C+k+F+ +  L +H  +H
  Peinf101Scf02382g09017.1 129 YQCDICNKVFKCSQALGSHKLMH 151
                               9**********999999998887 PP
2zf-C2H215.26.1e-05175197123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp Cgk F +   L rH ++H
  Peinf101Scf02382g09017.1 175 HECPFCGKIFGSAQALGRHKSSH 197
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-4127152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.24E-10127197No hitNo description
PfamPF139122.9E-5129152IPR007087Zinc finger, C2H2
SMARTSM003550.031129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
PfamPF139123.3E-6175197IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93175197IPR007087Zinc finger, C2H2
SMARTSM003550.0042175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPLQPKTPPQ NQDSGGHSES TLSLYSSENQ EEEEIQEKNL GYGLRENPRK SFRIVDPEFL  60
EDQESDTEPT RKSRSKRNGK MQAKNGSLSY TNFSDEDIAM CLMKLSKDTW TSRNDTNNKL  120
ELRKKQRKYQ CDICNKVFKC SQALGSHKLM HKKRDSERES IQEKQRQVNV EQNLHECPFC  180
GKIFGSAQAL GRHKSSHILS TSTTECSSLK VGDSLMDSNF GKCPSGFIDL NMPAPMEDEE  240
YFYKNGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758380.15e-71PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016481923.15e-71PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4AZH71e-69A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7V9841e-69A0A1U7V984_NICSY; zinc finger protein ZAT9-like
STRINGXP_009758380.12e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-26C2H2-like zinc finger protein