PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02382g06031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 472aa    MW: 53792.6 Da    PI: 5.9278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02382g06031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-1852102155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr++  +++Wv+e+r+p     + kr++lg++ t+e+Aa+a++ a+++l+g
  Peinf101Scf02382g06031.1  52 PVYRGVRRRN-NNKWVCELREPI----KqKRIWLGTYPTPEMAARAHDLAALALKG 102
                               68*****887.8*********72....35************************998 PP
2AP256.85.6e-18279329155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr++  +++Wv+e+r+p     + kr++lg++ t+e+Aa+a++ a+++l+g
  Peinf101Scf02382g06031.1 279 PVYRGVRRRN-NNKWVCELREPI----KqKRIWLGTYPTPEMAARAHDVAALALRG 329
                               68*****887.8*********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1352102IPR001471AP2/ERF domain
PROSITE profilePS5103221.40453110IPR001471AP2/ERF domain
SMARTSM003801.2E-2553116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2753112IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2053112IPR016177DNA-binding domain
CDDcd000186.82E-2654112No hitNo description
PRINTSPR003678.9E-75465IPR001471AP2/ERF domain
PRINTSPR003678.9E-77692IPR001471AP2/ERF domain
PfamPF008472.8E-13279329IPR001471AP2/ERF domain
SMARTSM003804.6E-27280343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-28280339IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21280339IPR016177DNA-binding domain
PROSITE profilePS5103221.746280337IPR001471AP2/ERF domain
CDDcd000185.91E-28281339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MNDNSSSCSS DLNPSSSSIR AAASSDEEFT LLASSRPKRR TGRKKFKETR HPVYRGVRRR  60
NNNKWVCELR EPIKQKRIWL GTYPTPEMAA RAHDLAALAL KGNLATLNFA DSRWKLPVPV  120
SKDPKDLRQA AVKAAQAFRQ DPELVGVDYM NDEVNSRSEE TVVNKELKME MGSILCCTTN  180
WGDNNEMLEE SWQEKMANGR LFSPTPRIGS YFSWDDVEIS DVEVSLWSYK MESYSSSSSS  240
DRIPLRTTST SDEEFNVLLA SSLPKRRTGR KKFKETRHPV YRGVRRRNNN KWVCELREPI  300
KQKRIWLGTY PTPEMAARAH DVAALALRGS LATLNFADSI WRLPVPVSND PKDIRLAASK  360
AAQAFRQDPE LVEVDYMNDE VSSSEEVKCQ EFVVGTNNDL EAKELKMQNM EMESILCCNW  420
GDNSEILEIE GSWQENMANG LLFSPTPRLG SRFCWDDVEI SDVEVPLWSY CD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469418.11e-118PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9LN861e-49DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1S3ZYI81e-117A0A1S3ZYI8_TOBAC; dehydration-responsive element-binding protein 1D-like
STRINGXP_009619193.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.13e-42ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]